Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 RBM11P1-201ENST00000604951 799 ntBASIC1.1□□□□□ -2.23
RPUSD4Q96CM3 AL132765.2-201ENST00000610812 351 ntBASIC1.1□□□□□ -2.23
RPUSD4Q96CM3 AC021506.2-201ENST00000612354 169 ntBASIC1.1□□□□□ -2.23
RPUSD4Q96CM3 MIR1244-1-201ENST00000612829 85 ntBASIC1.1□□□□□ -2.23
RPUSD4Q96CM3 AL513423.1-201ENST00000621695 132 ntBASIC1.1□□□□□ -2.23
RPUSD4Q96CM3 MIR1244-3-201ENST00000635744 85 ntBASIC1.1□□□□□ -2.23
RPUSD4Q96CM3 U6.115-201ENST00000636045 103 ntBASIC1.1□□□□□ -2.23
RPUSD4Q96CM3 MIR1244-2-201ENST00000636449 85 ntBASIC1.1□□□□□ -2.23
RPUSD4Q96CM3 MIR3674-201ENST00000636576 68 ntBASIC1.1□□□□□ -2.23
RPUSD4Q96CM3 MIR1244-4-202ENST00000636813 85 ntBASIC1.1□□□□□ -2.23
RPUSD4Q96CM3 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AC091812.1-201ENST00000432235 1948 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AC245060.5-201ENST00000610778 3293 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 RNU6-490P-201ENST00000362985 107 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 SNORA72.1-201ENST00000363485 129 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 RNU6-454P-201ENST00000364292 107 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 RNU6-1310P-201ENST00000384153 107 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 Y_RNA.498-201ENST00000384460 102 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 MIR873-201ENST00000401120 77 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 RPS27P16-201ENST00000425758 201 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AC010154.1-201ENST00000425857 269 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AC245047.3-201ENST00000429428 127 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 SNRPGP13-201ENST00000442212 177 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 MTCO3P10-201ENST00000455912 772 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AC010469.2-201ENST00000496412 480 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AC079140.2-201ENST00000506193 142 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 RN7SKP179-201ENST00000516126 217 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 RNU6-107P-201ENST00000516643 102 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AC144568.1-201ENST00000520139 137 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 RAB11AP2-201ENST00000545905 639 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AL929325.1-201ENST00000603096 117 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AP001485.1-201ENST00000604799 199 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 MIR7843-201ENST00000622274 79 ntBASIC1.09□□□□□ -2.23
RPUSD4Q96CM3 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 Y_RNA.303-201ENST00000364998 94 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 RNU6-117P-201ENST00000365415 107 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 SNORD116-29-201ENST00000384516 83 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 MIR559-201ENST00000385188 96 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 RNU6-440P-201ENST00000390882 105 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 RNY4P36-201ENST00000391116 96 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 RNU6-1186P-201ENST00000410429 97 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 SNORD12B-201ENST00000410433 91 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 CYCSP49-201ENST00000420810 319 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 AL121890.1-201ENST00000435457 205 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 AC099799.1-201ENST00000439809 192 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 snoU13.15-201ENST00000459407 104 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 RPS27P22-201ENST00000478056 241 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 AC015720.1-201ENST00000565251 277 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 AC091178.2-201ENST00000584401 117 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 AC138305.3-201ENST00000624988 240 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 MIR6079-201ENST00000635807 62 ntBASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.08□□□□□ -2.24
RPUSD4Q96CM3 Y_RNA.263-201ENST00000364659 114 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 RNU6-60P-201ENST00000364792 103 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 RNU6-1040P-201ENST00000383974 107 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 MRPL35P1-201ENST00000404272 572 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 AL034345.1-201ENST00000407768 123 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 AC018865.2-201ENST00000423631 129 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 AL137792.2-201ENST00000443484 235 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 RNU7-34P-201ENST00000459394 64 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 AC091951.2-201ENST00000500762 203 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 RNA5SP20-201ENST00000515976 84 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 RNU6-341P-201ENST00000516973 96 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 Y_RNA.718-201ENST00000517110 102 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 RNU7-172P-201ENST00000517125 64 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 RNU2-12P-201ENST00000517216 168 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 AL358944.1-201ENST00000528537 144 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 AC023157.2-201ENST00000540596 141 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 MIR4801-201ENST00000582704 82 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 SNORA28-201ENST00000606769 126 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 AL121890.5-201ENST00000620848 304 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 AC091925.1-201ENST00000623204 462 ntBASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
RPUSD4Q96CM3 RNU6-1065P-201ENST00000384513 106 ntBASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 MIR513A1-201ENST00000385138 129 ntBASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 MIR1289-2-201ENST00000408360 111 ntBASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 RNA5SP475-201ENST00000410568 110 ntBASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 RNU5A-5P-201ENST00000411054 116 ntBASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 OOSP1P1-201ENST00000423265 274 ntBASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 SNORD13-201ENST00000459299 104 ntBASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 RPL30P7-201ENST00000479312 323 ntBASIC1.06□□□□□ -2.24
RPUSD4Q96CM3 RNU6-875P-201ENST00000516488 106 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms