Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC004467.1-201ENST00000615678 330 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 MIR3674-201ENST00000636576 68 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.73□□□□□ -2.13
PDLIM3Q53GG5 RNU6-626P-201ENST00000363354 107 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 SNORA33-201ENST00000363664 130 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 RNU6-1240P-201ENST00000365155 104 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 RNU6-20P-201ENST00000384106 107 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 Y_RNA.471-201ENST00000384312 102 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 Y_RNA.527-201ENST00000384573 102 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 MIR221-201ENST00000385135 110 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 MRPL42P3-201ENST00000401492 326 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 RNU6-1186P-201ENST00000410429 97 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 AC074133.1-201ENST00000515696 183 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 RNU6-911P-201ENST00000516523 104 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 RNU2-34P-201ENST00000516534 121 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 RNU6-1012P-201ENST00000516606 109 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 Y_RNA.711-201ENST00000516993 102 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 CYCSP23-201ENST00000519781 313 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 AC023157.2-201ENST00000540596 141 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 AL138825.1-201ENST00000618587 192 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 AC022513.1-201ENST00000624512 117 ntBASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
PDLIM3Q53GG5 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 RNA5SP138-201ENST00000365098 114 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 RNU6-1264P-201ENST00000383891 107 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 RNA5SP323-201ENST00000391094 133 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 Y_RNA.645-201ENST00000391229 102 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 RNA5SP467-201ENST00000391274 118 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 SNORA11.4-201ENST00000408823 129 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 AC008134.1-201ENST00000420943 193 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 AC005534.2-201ENST00000431047 433 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 AC099677.2-201ENST00000436385 175 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 SNORA40.14-201ENST00000516543 86 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 AL390123.1-201ENST00000603216 237 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.71□□□□□ -2.14
PDLIM3Q53GG5 Y_RNA.143-201ENST00000363520 106 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 Y_RNA.202-201ENST00000364083 110 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 RNU6-407P-201ENST00000365280 104 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 MIR1302-11-201ENST00000408051 138 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 MIR1302-9-201ENST00000408365 138 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 MIR1302-10-201ENST00000408734 138 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 RNU6-101P-201ENST00000410323 104 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 RPL31P63-201ENST00000422565 375 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 TOMM22P2-201ENST00000430735 237 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 RPL23AP7-203ENST00000449021 469 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 AC112492.4-201ENST00000456549 352 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 RPS27P22-201ENST00000478056 241 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 AC005786.1-201ENST00000588553 154 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 AC005176.2-201ENST00000596933 147 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 AC104695.3-201ENST00000604052 296 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 MIR1302-2-201ENST00000607096 138 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.15-201ENST00000611544 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.16-201ENST00000613119 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 MIR6504-201ENST00000613520 61 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.12-201ENST00000613778 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.20-201ENST00000613956 192 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.9-201ENST00000615427 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.11-201ENST00000616345 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.2-201ENST00000616535 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.3-201ENST00000617785 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.19-201ENST00000618602 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 RNU2-1-201ENST00000618664 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.6-201ENST00000619225 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.5-201ENST00000619465 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 U2.10-201ENST00000620268 191 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 MIR338-201ENST00000636369 67 ntBASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
PDLIM3Q53GG5 snoU2-30.2-201ENST00000362805 70 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 RNU6-324P-201ENST00000363957 106 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 RNY1-201ENST00000364228 113 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 RNU6-454P-201ENST00000364292 107 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 Y_RNA.287-201ENST00000364853 94 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 Y_RNA.458-201ENST00000384240 102 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 AC019129.1-201ENST00000403786 261 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 RNA5SP338-201ENST00000410495 85 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 AC005002.2-201ENST00000438228 269 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 NDUFB4P10-201ENST00000452541 359 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 SNORD65B-201ENST00000459126 73 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 RPL26P26-201ENST00000480251 434 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 AP003072.1-201ENST00000531740 145 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 AC022254.1-201ENST00000567857 235 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 AL078603.1-201ENST00000603824 313 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 AL021879.1-201ENST00000611756 288 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 MIR6734-201ENST00000621166 68 ntBASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
PDLIM3Q53GG5 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms