Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 RNU1-115P-201ENST00000365329 160 ntBASIC1.51□□□□□ -2.17
PEX3P56589 Y_RNA.361-201ENST00000365515 120 ntBASIC1.51□□□□□ -2.17
PEX3P56589 RNU6-417P-201ENST00000384712 107 ntBASIC1.51□□□□□ -2.17
PEX3P56589 SNORD12B-201ENST00000410433 91 ntBASIC1.51□□□□□ -2.17
PEX3P56589 RAB28P5-201ENST00000427490 651 ntBASIC1.51□□□□□ -2.17
PEX3P56589 Y_RNA.639-201ENST00000458981 102 ntBASIC1.51□□□□□ -2.17
PEX3P56589 RNU6-976P-201ENST00000516086 111 ntBASIC1.51□□□□□ -2.17
PEX3P56589 RNU6-1012P-201ENST00000516606 109 ntBASIC1.51□□□□□ -2.17
PEX3P56589 AC144568.1-201ENST00000520139 137 ntBASIC1.51□□□□□ -2.17
PEX3P56589 AC022432.1-201ENST00000595739 310 ntBASIC1.51□□□□□ -2.17
PEX3P56589 AL050343.2-201ENST00000607338 280 ntBASIC1.51□□□□□ -2.17
PEX3P56589 U2.1-201ENST00000618978 145 ntBASIC1.51□□□□□ -2.17
PEX3P56589 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
PEX3P56589 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.5□□□□□ -2.17
PEX3P56589 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.5□□□□□ -2.17
PEX3P56589 AC010615.1-201ENST00000594254 1764 ntBASIC1.5□□□□□ -2.17
PEX3P56589 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.5□□□□□ -2.17
PEX3P56589 Y_RNA.112-201ENST00000363250 102 ntBASIC1.5□□□□□ -2.17
PEX3P56589 MIR515-2-201ENST00000384883 83 ntBASIC1.5□□□□□ -2.17
PEX3P56589 MIR515-1-201ENST00000384884 83 ntBASIC1.5□□□□□ -2.17
PEX3P56589 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.5□□□□□ -2.17
PEX3P56589 HSPE1P21-201ENST00000438283 308 ntBASIC1.5□□□□□ -2.17
PEX3P56589 AL137792.2-201ENST00000443484 235 ntBASIC1.5□□□□□ -2.17
PEX3P56589 RPS27P1-201ENST00000450552 247 ntBASIC1.5□□□□□ -2.17
PEX3P56589 AC009474.2-201ENST00000451383 136 ntBASIC1.5□□□□□ -2.17
PEX3P56589 SNORD65B-201ENST00000459126 73 ntBASIC1.5□□□□□ -2.17
PEX3P56589 Y_RNA.638-201ENST00000459374 113 ntBASIC1.5□□□□□ -2.17
PEX3P56589 RNU6-1146P-201ENST00000516282 102 ntBASIC1.5□□□□□ -2.17
PEX3P56589 RNU4-77P-201ENST00000516692 156 ntBASIC1.5□□□□□ -2.17
PEX3P56589 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.5□□□□□ -2.17
PEX3P56589 AC024995.1-201ENST00000523014 93 ntBASIC1.5□□□□□ -2.17
PEX3P56589 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.5□□□□□ -2.17
PEX3P56589 AC006435.5-201ENST00000624486 112 ntBASIC1.5□□□□□ -2.17
PEX3P56589 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
PEX3P56589 SNORA7.1-201ENST00000363750 139 ntBASIC1.49□□□□□ -2.17
PEX3P56589 RNU6-961P-201ENST00000363893 105 ntBASIC1.49□□□□□ -2.17
PEX3P56589 Y_RNA.197-201ENST00000364004 102 ntBASIC1.49□□□□□ -2.17
PEX3P56589 SNORA72.2-201ENST00000365028 127 ntBASIC1.49□□□□□ -2.17
PEX3P56589 Y_RNA.314-201ENST00000365114 102 ntBASIC1.49□□□□□ -2.17
PEX3P56589 RNA5SP467-201ENST00000391274 118 ntBASIC1.49□□□□□ -2.17
PEX3P56589 MIR934-201ENST00000401241 83 ntBASIC1.49□□□□□ -2.17
PEX3P56589 MRPL35P1-201ENST00000404272 572 ntBASIC1.49□□□□□ -2.17
PEX3P56589 AL355796.1-201ENST00000406706 323 ntBASIC1.49□□□□□ -2.17
PEX3P56589 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.49□□□□□ -2.17
PEX3P56589 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.49□□□□□ -2.17
PEX3P56589 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.49□□□□□ -2.17
PEX3P56589 RNU6-625P-201ENST00000459412 107 ntBASIC1.49□□□□□ -2.17
PEX3P56589 AC055872.1-201ENST00000570978 278 ntBASIC1.49□□□□□ -2.17
PEX3P56589 AL080274.1-201ENST00000605565 220 ntBASIC1.49□□□□□ -2.17
PEX3P56589 SNORD58B-201ENST00000607313 66 ntBASIC1.49□□□□□ -2.17
PEX3P56589 uc_338.22-201ENST00000622722 187 ntBASIC1.49□□□□□ -2.17
PEX3P56589 Y_RNA.27-201ENST00000362540 103 ntBASIC1.48□□□□□ -2.17
PEX3P56589 Y_RNA.61-201ENST00000362835 102 ntBASIC1.48□□□□□ -2.17
PEX3P56589 RNU6-203P-201ENST00000384038 104 ntBASIC1.48□□□□□ -2.17
PEX3P56589 Y_RNA.428-201ENST00000384078 102 ntBASIC1.48□□□□□ -2.17
PEX3P56589 RNU6-439P-201ENST00000384188 106 ntBASIC1.48□□□□□ -2.17
PEX3P56589 RNU6-708P-201ENST00000384217 107 ntBASIC1.48□□□□□ -2.17
PEX3P56589 MIR520A-201ENST00000384862 85 ntBASIC1.48□□□□□ -2.17
PEX3P56589 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.48□□□□□ -2.17
PEX3P56589 RNU1-123P-201ENST00000458950 160 ntBASIC1.48□□□□□ -2.17
PEX3P56589 RNU7-169P-201ENST00000459456 61 ntBASIC1.48□□□□□ -2.17
PEX3P56589 RNA5SP57-201ENST00000459463 123 ntBASIC1.48□□□□□ -2.17
PEX3P56589 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.48□□□□□ -2.17
PEX3P56589 AC010469.2-201ENST00000496412 480 ntBASIC1.48□□□□□ -2.17
PEX3P56589 SNORD116.3-201ENST00000517176 78 ntBASIC1.48□□□□□ -2.17
PEX3P56589 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.48□□□□□ -2.17
PEX3P56589 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.48□□□□□ -2.17
PEX3P56589 VN1R91P-201ENST00000594377 169 ntBASIC1.48□□□□□ -2.17
PEX3P56589 U6.73-201ENST00000619194 103 ntBASIC1.48□□□□□ -2.17
PEX3P56589 U6.92-201ENST00000636464 89 ntBASIC1.48□□□□□ -2.17
PEX3P56589 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
PEX3P56589 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
PEX3P56589 Y_RNA.394-201ENST00000383942 103 ntBASIC1.47□□□□□ -2.17
PEX3P56589 Y_RNA.419-201ENST00000384041 102 ntBASIC1.47□□□□□ -2.17
PEX3P56589 AC022028.1-201ENST00000412054 408 ntBASIC1.47□□□□□ -2.17
PEX3P56589 AC096644.2-201ENST00000429278 159 ntBASIC1.47□□□□□ -2.17
PEX3P56589 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.47□□□□□ -2.17
PEX3P56589 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.47□□□□□ -2.17
PEX3P56589 AL606517.2-201ENST00000442855 241 ntBASIC1.47□□□□□ -2.17
PEX3P56589 AC008834.1-201ENST00000511612 175 ntBASIC1.47□□□□□ -2.17
PEX3P56589 RNU2-12P-201ENST00000517216 168 ntBASIC1.47□□□□□ -2.17
PEX3P56589 MIR3674-201ENST00000636576 68 ntBASIC1.47□□□□□ -2.17
PEX3P56589 MTND4P29-201ENST00000503122 1372 ntBASIC1.47□□□□□ -2.17
PEX3P56589 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
PEX3P56589 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
PEX3P56589 Y_RNA.243-201ENST00000364481 109 ntBASIC1.46□□□□□ -2.18
PEX3P56589 SNORA20B-201ENST00000384220 132 ntBASIC1.46□□□□□ -2.18
PEX3P56589 RNY1P14-201ENST00000384426 108 ntBASIC1.46□□□□□ -2.18
PEX3P56589 Y_RNA.535-201ENST00000384612 99 ntBASIC1.46□□□□□ -2.18
PEX3P56589 SNORD78.2-201ENST00000391076 69 ntBASIC1.46□□□□□ -2.18
PEX3P56589 AL161935.2-201ENST00000414627 60 ntBASIC1.46□□□□□ -2.18
PEX3P56589 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.46□□□□□ -2.18
PEX3P56589 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.46□□□□□ -2.18
PEX3P56589 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.46□□□□□ -2.18
PEX3P56589 AC069257.2-201ENST00000441819 155 ntBASIC1.46□□□□□ -2.18
PEX3P56589 FCF1P4-201ENST00000448326 183 ntBASIC1.46□□□□□ -2.18
PEX3P56589 MRPS10P1-201ENST00000448483 130 ntBASIC1.46□□□□□ -2.18
PEX3P56589 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.46□□□□□ -2.18
PEX3P56589 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.46□□□□□ -2.18
PEX3P56589 AC010598.1-201ENST00000510378 103 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms