Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AL590240.4-201ENST00000616908 390 ntBASIC2.32□□□□□ -2.04
CIITAP33076 SDR42E1P4-201ENST00000620894 481 ntBASIC2.32□□□□□ -2.04
CIITAP33076 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.32□□□□□ -2.04
CIITAP33076 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.32□□□□□ -2.04
CIITAP33076 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
CIITAP33076 MIR340-201ENST00000362125 95 ntBASIC2.31□□□□□ -2.04
CIITAP33076 MIR335-201ENST00000362173 94 ntBASIC2.31□□□□□ -2.04
CIITAP33076 SNORD114-1-201ENST00000362705 72 ntBASIC2.31□□□□□ -2.04
CIITAP33076 U3.8-201ENST00000363675 217 ntBASIC2.31□□□□□ -2.04
CIITAP33076 RNU6-1305P-201ENST00000364353 104 ntBASIC2.31□□□□□ -2.04
CIITAP33076 Y_RNA.447-201ENST00000384184 113 ntBASIC2.31□□□□□ -2.04
CIITAP33076 MIR1283-1-201ENST00000408494 87 ntBASIC2.31□□□□□ -2.04
CIITAP33076 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.31□□□□□ -2.04
CIITAP33076 HMGN2P18-201ENST00000450680 270 ntBASIC2.31□□□□□ -2.04
CIITAP33076 AC016925.1-201ENST00000458303 298 ntBASIC2.31□□□□□ -2.04
CIITAP33076 SEPT14P8-201ENST00000508026 178 ntBASIC2.31□□□□□ -2.04
CIITAP33076 RNU7-110P-201ENST00000516891 62 ntBASIC2.31□□□□□ -2.04
CIITAP33076 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CIITAP33076 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CIITAP33076 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
CIITAP33076 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
CIITAP33076 RNU4-90P-201ENST00000362773 141 ntBASIC2.3□□□□□ -2.04
CIITAP33076 Y_RNA.188-201ENST00000363952 111 ntBASIC2.3□□□□□ -2.04
CIITAP33076 SNORD31B-201ENST00000364977 69 ntBASIC2.3□□□□□ -2.04
CIITAP33076 RNU6-290P-201ENST00000365212 101 ntBASIC2.3□□□□□ -2.04
CIITAP33076 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
CIITAP33076 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.3□□□□□ -2.04
CIITAP33076 AC096920.1-201ENST00000423991 241 ntBASIC2.3□□□□□ -2.04
CIITAP33076 snoU13.15-201ENST00000459407 104 ntBASIC2.3□□□□□ -2.04
CIITAP33076 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.3□□□□□ -2.04
CIITAP33076 RNU7-193P-201ENST00000516723 65 ntBASIC2.3□□□□□ -2.04
CIITAP33076 RNU6-1271P-201ENST00000517049 105 ntBASIC2.3□□□□□ -2.04
CIITAP33076 MIR3128-201ENST00000581957 66 ntBASIC2.3□□□□□ -2.04
CIITAP33076 MIR6840-201ENST00000611937 71 ntBASIC2.3□□□□□ -2.04
CIITAP33076 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
CIITAP33076 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.3□□□□□ -2.04
CIITAP33076 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CIITAP33076 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
CIITAP33076 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
CIITAP33076 AL391987.6-201ENST00000305671 199 ntBASIC2.29□□□□□ -2.04
CIITAP33076 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
CIITAP33076 RNU6-379P-201ENST00000363813 104 ntBASIC2.29□□□□□ -2.04
CIITAP33076 Y_RNA.350-201ENST00000365409 98 ntBASIC2.29□□□□□ -2.04
CIITAP33076 Y_RNA.418-201ENST00000384029 102 ntBASIC2.29□□□□□ -2.04
CIITAP33076 MIR29C-201ENST00000385231 88 ntBASIC2.29□□□□□ -2.04
CIITAP33076 MIR1185-2-201ENST00000408687 86 ntBASIC2.29□□□□□ -2.04
CIITAP33076 RNU2-54P-201ENST00000410299 190 ntBASIC2.29□□□□□ -2.04
CIITAP33076 Y_RNA.618-201ENST00000410949 107 ntBASIC2.29□□□□□ -2.04
CIITAP33076 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.29□□□□□ -2.04
CIITAP33076 SNORA4.4-201ENST00000515921 135 ntBASIC2.29□□□□□ -2.04
CIITAP33076 RNU6-107P-201ENST00000516643 102 ntBASIC2.29□□□□□ -2.04
CIITAP33076 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.29□□□□□ -2.04
CIITAP33076 AC007229.1-201ENST00000590455 412 ntBASIC2.29□□□□□ -2.04
CIITAP33076 AC008749.1-201ENST00000597650 306 ntBASIC2.29□□□□□ -2.04
CIITAP33076 Y_RNA.783-201ENST00000613546 102 ntBASIC2.29□□□□□ -2.04
CIITAP33076 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CIITAP33076 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
CIITAP33076 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.28□□□□□ -2.04
CIITAP33076 AC008555.8-201ENST00000623602 2168 ntBASIC2.28□□□□□ -2.04
CIITAP33076 Y_RNA.331-201ENST00000365267 102 ntBASIC2.28□□□□□ -2.04
CIITAP33076 RNU6-1310P-201ENST00000384153 107 ntBASIC2.28□□□□□ -2.04
CIITAP33076 RNU6-975P-201ENST00000384296 105 ntBASIC2.28□□□□□ -2.04
CIITAP33076 MIR300-201ENST00000401138 83 ntBASIC2.28□□□□□ -2.04
CIITAP33076 RNA5SP475-201ENST00000410568 110 ntBASIC2.28□□□□□ -2.04
CIITAP33076 AL390729.2-201ENST00000416137 156 ntBASIC2.28□□□□□ -2.04
CIITAP33076 AC016717.1-201ENST00000448918 286 ntBASIC2.28□□□□□ -2.04
CIITAP33076 AL137159.1-201ENST00000452808 512 ntBASIC2.28□□□□□ -2.04
CIITAP33076 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.28□□□□□ -2.04
CIITAP33076 RNU6-667P-201ENST00000517186 102 ntBASIC2.28□□□□□ -2.04
CIITAP33076 DEFB122-202ENST00000569013 197 ntBASIC2.28□□□□□ -2.04
CIITAP33076 MIR5089-201ENST00000580047 84 ntBASIC2.28□□□□□ -2.04
CIITAP33076 AL031274.2-201ENST00000599419 203 ntBASIC2.28□□□□□ -2.04
CIITAP33076 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.28□□□□□ -2.04
CIITAP33076 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.28□□□□□ -2.05
CIITAP33076 Y_RNA.60-201ENST00000362831 98 ntBASIC2.27□□□□□ -2.05
CIITAP33076 RNU6-743P-201ENST00000364151 106 ntBASIC2.27□□□□□ -2.05
CIITAP33076 Y_RNA.243-201ENST00000364481 109 ntBASIC2.27□□□□□ -2.05
CIITAP33076 Y_RNA.332-201ENST00000365271 113 ntBASIC2.27□□□□□ -2.05
CIITAP33076 Y_RNA.361-201ENST00000365515 120 ntBASIC2.27□□□□□ -2.05
CIITAP33076 RNU6-21P-201ENST00000384710 107 ntBASIC2.27□□□□□ -2.05
CIITAP33076 AL355497.1-201ENST00000406262 551 ntBASIC2.27□□□□□ -2.05
CIITAP33076 TOMM22P2-201ENST00000430735 237 ntBASIC2.27□□□□□ -2.05
CIITAP33076 MTCO1P44-201ENST00000441935 243 ntBASIC2.27□□□□□ -2.05
CIITAP33076 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.27□□□□□ -2.05
CIITAP33076 MRPS10P1-201ENST00000448483 130 ntBASIC2.27□□□□□ -2.05
CIITAP33076 AC005042.3-201ENST00000453230 174 ntBASIC2.27□□□□□ -2.05
CIITAP33076 MTND4LP30-201ENST00000454092 297 ntBASIC2.27□□□□□ -2.05
CIITAP33076 AC025033.1-201ENST00000463883 194 ntBASIC2.27□□□□□ -2.05
CIITAP33076 AC093259.1-201ENST00000509755 300 ntBASIC2.27□□□□□ -2.05
CIITAP33076 SERF1AP1-201ENST00000514575 187 ntBASIC2.27□□□□□ -2.05
CIITAP33076 RNU6-436P-201ENST00000516171 114 ntBASIC2.27□□□□□ -2.05
CIITAP33076 SCARNA24.2-201ENST00000516968 130 ntBASIC2.27□□□□□ -2.05
CIITAP33076 SNORA31.25-201ENST00000517242 134 ntBASIC2.27□□□□□ -2.05
CIITAP33076 MIR4643-201ENST00000577473 78 ntBASIC2.27□□□□□ -2.05
CIITAP33076 AC005828.6-201ENST00000606610 232 ntBASIC2.27□□□□□ -2.05
CIITAP33076 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.27□□□□□ -2.05
CIITAP33076 U6.104-201ENST00000637979 90 ntBASIC2.27□□□□□ -2.05
CIITAP33076 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
CIITAP33076 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CIITAP33076 Y_RNA.136-201ENST00000363444 102 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms