Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.25□□□□□ -2.21
SDC1P18827 AC114482.1-201ENST00000418010 247 ntBASIC1.25□□□□□ -2.21
SDC1P18827 MRPS18CP6-201ENST00000423587 223 ntBASIC1.25□□□□□ -2.21
SDC1P18827 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.25□□□□□ -2.21
SDC1P18827 RPS27P16-201ENST00000425758 201 ntBASIC1.25□□□□□ -2.21
SDC1P18827 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.25□□□□□ -2.21
SDC1P18827 AC245047.3-201ENST00000429428 127 ntBASIC1.25□□□□□ -2.21
SDC1P18827 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.25□□□□□ -2.21
SDC1P18827 Y_RNA.653-201ENST00000459091 95 ntBASIC1.25□□□□□ -2.21
SDC1P18827 AC097462.1-201ENST00000514125 324 ntBASIC1.25□□□□□ -2.21
SDC1P18827 RNA5SP445-201ENST00000515889 115 ntBASIC1.25□□□□□ -2.21
SDC1P18827 RNU6-264P-201ENST00000517134 104 ntBASIC1.25□□□□□ -2.21
SDC1P18827 AC019176.1-201ENST00000518519 225 ntBASIC1.25□□□□□ -2.21
SDC1P18827 AC104984.5-201ENST00000586878 94 ntBASIC1.25□□□□□ -2.21
SDC1P18827 AL390123.1-201ENST00000603216 237 ntBASIC1.25□□□□□ -2.21
SDC1P18827 AL132765.2-201ENST00000610812 351 ntBASIC1.25□□□□□ -2.21
SDC1P18827 MIR8054-201ENST00000620877 86 ntBASIC1.25□□□□□ -2.21
SDC1P18827 AL161722.3-201ENST00000605789 2983 ntBASIC1.24□□□□□ -2.21
SDC1P18827 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
SDC1P18827 RNU1-22P-201ENST00000363334 158 ntBASIC1.24□□□□□ -2.21
SDC1P18827 RNU6-457P-201ENST00000363999 107 ntBASIC1.24□□□□□ -2.21
SDC1P18827 RNY3P11-201ENST00000364153 102 ntBASIC1.24□□□□□ -2.21
SDC1P18827 RNU6-454P-201ENST00000364292 107 ntBASIC1.24□□□□□ -2.21
SDC1P18827 RNU6-1031P-201ENST00000384773 107 ntBASIC1.24□□□□□ -2.21
SDC1P18827 MIR625-201ENST00000385047 85 ntBASIC1.24□□□□□ -2.21
SDC1P18827 MIR559-201ENST00000385188 96 ntBASIC1.24□□□□□ -2.21
SDC1P18827 SNORA69.1-201ENST00000390904 137 ntBASIC1.24□□□□□ -2.21
SDC1P18827 MRPL35P1-201ENST00000404272 572 ntBASIC1.24□□□□□ -2.21
SDC1P18827 MTND4P28-201ENST00000426217 387 ntBASIC1.24□□□□□ -2.21
SDC1P18827 SDAD1P3-201ENST00000427380 333 ntBASIC1.24□□□□□ -2.21
SDC1P18827 AC027119.1-201ENST00000440877 241 ntBASIC1.24□□□□□ -2.21
SDC1P18827 AC004223.1-201ENST00000479840 271 ntBASIC1.24□□□□□ -2.21
SDC1P18827 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.24□□□□□ -2.21
SDC1P18827 AC091951.2-201ENST00000500762 203 ntBASIC1.24□□□□□ -2.21
SDC1P18827 RNU6-470P-201ENST00000515954 104 ntBASIC1.24□□□□□ -2.21
SDC1P18827 MIR2355-201ENST00000517199 87 ntBASIC1.24□□□□□ -2.21
SDC1P18827 AL161670.1-201ENST00000554348 137 ntBASIC1.24□□□□□ -2.21
SDC1P18827 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.24□□□□□ -2.21
SDC1P18827 AC073413.2-201ENST00000604332 360 ntBASIC1.24□□□□□ -2.21
SDC1P18827 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.24□□□□□ -2.21
SDC1P18827 MIR3674-201ENST00000636576 68 ntBASIC1.24□□□□□ -2.21
SDC1P18827 MIR1302-1-201ENST00000637932 143 ntBASIC1.24□□□□□ -2.21
SDC1P18827 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
SDC1P18827 ZNF209P-201ENST00000593450 2304 ntBASIC1.23□□□□□ -2.21
SDC1P18827 Y_RNA.387-201ENST00000383918 102 ntBASIC1.23□□□□□ -2.21
SDC1P18827 RNU6-950P-201ENST00000384651 107 ntBASIC1.23□□□□□ -2.21
SDC1P18827 MIR764-201ENST00000390811 85 ntBASIC1.23□□□□□ -2.21
SDC1P18827 RNU6-440P-201ENST00000390882 105 ntBASIC1.23□□□□□ -2.21
SDC1P18827 RNY4P36-201ENST00000391116 96 ntBASIC1.23□□□□□ -2.21
SDC1P18827 MRPL42P3-201ENST00000401492 326 ntBASIC1.23□□□□□ -2.21
SDC1P18827 MTCYBP4-201ENST00000401524 249 ntBASIC1.23□□□□□ -2.21
SDC1P18827 AC018865.2-201ENST00000423631 129 ntBASIC1.23□□□□□ -2.21
SDC1P18827 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.23□□□□□ -2.21
SDC1P18827 AC245517.4-201ENST00000448601 281 ntBASIC1.23□□□□□ -2.21
SDC1P18827 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.23□□□□□ -2.21
SDC1P18827 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.23□□□□□ -2.21
SDC1P18827 U6.115-201ENST00000636045 103 ntBASIC1.23□□□□□ -2.21
SDC1P18827 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
SDC1P18827 AC018630.2-201ENST00000534866 2403 ntBASIC1.23□□□□□ -2.21
SDC1P18827 SNORA27.1-201ENST00000362604 124 ntBASIC1.22□□□□□ -2.21
SDC1P18827 Y_RNA.259-201ENST00000364619 101 ntBASIC1.22□□□□□ -2.21
SDC1P18827 RNU6-407P-201ENST00000365280 104 ntBASIC1.22□□□□□ -2.21
SDC1P18827 MIR150-201ENST00000385048 84 ntBASIC1.22□□□□□ -2.21
SDC1P18827 MIR513A1-201ENST00000385138 129 ntBASIC1.22□□□□□ -2.21
SDC1P18827 SNORA17.3-201ENST00000391159 129 ntBASIC1.22□□□□□ -2.21
SDC1P18827 MTCO3P19-201ENST00000415864 321 ntBASIC1.22□□□□□ -2.21
SDC1P18827 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.22□□□□□ -2.21
SDC1P18827 ELOCP24-201ENST00000456370 334 ntBASIC1.22□□□□□ -2.21
SDC1P18827 RNU7-169P-201ENST00000459456 61 ntBASIC1.22□□□□□ -2.21
SDC1P18827 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.22□□□□□ -2.21
SDC1P18827 AC079140.2-201ENST00000506193 142 ntBASIC1.22□□□□□ -2.21
SDC1P18827 RNA5SP20-201ENST00000515976 84 ntBASIC1.22□□□□□ -2.21
SDC1P18827 RNU7-172P-201ENST00000517125 64 ntBASIC1.22□□□□□ -2.21
SDC1P18827 RNU6-902P-201ENST00000517212 91 ntBASIC1.22□□□□□ -2.21
SDC1P18827 AC008269.2-201ENST00000561915 1105 ntBASIC1.22□□□□□ -2.21
SDC1P18827 AP001485.1-201ENST00000604799 199 ntBASIC1.22□□□□□ -2.21
SDC1P18827 AC005828.6-201ENST00000606610 232 ntBASIC1.22□□□□□ -2.21
SDC1P18827 RNU6-1123P-201ENST00000362347 106 ntBASIC1.21□□□□□ -2.22
SDC1P18827 Y_RNA.124-201ENST00000363339 93 ntBASIC1.21□□□□□ -2.22
SDC1P18827 RNU6-961P-201ENST00000363893 105 ntBASIC1.21□□□□□ -2.22
SDC1P18827 RN7SKP200-201ENST00000410564 320 ntBASIC1.21□□□□□ -2.22
SDC1P18827 AC015922.2-201ENST00000435593 184 ntBASIC1.21□□□□□ -2.22
SDC1P18827 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.21□□□□□ -2.22
SDC1P18827 snoU13.23-201ENST00000458863 104 ntBASIC1.21□□□□□ -2.22
SDC1P18827 RNU6-408P-201ENST00000515910 100 ntBASIC1.21□□□□□ -2.22
SDC1P18827 RNU6-875P-201ENST00000516488 106 ntBASIC1.21□□□□□ -2.22
SDC1P18827 RNU7-4P-201ENST00000516961 62 ntBASIC1.21□□□□□ -2.22
SDC1P18827 RNU1-92P-201ENST00000517017 135 ntBASIC1.21□□□□□ -2.22
SDC1P18827 Y_RNA.718-201ENST00000517110 102 ntBASIC1.21□□□□□ -2.22
SDC1P18827 AC090821.2-201ENST00000523552 176 ntBASIC1.21□□□□□ -2.22
SDC1P18827 AC015712.3-201ENST00000559380 164 ntBASIC1.21□□□□□ -2.22
SDC1P18827 MIR3684-201ENST00000579779 74 ntBASIC1.21□□□□□ -2.22
SDC1P18827 MIR4801-201ENST00000582704 82 ntBASIC1.21□□□□□ -2.22
SDC1P18827 MIR3660-201ENST00000584845 100 ntBASIC1.21□□□□□ -2.22
SDC1P18827 RBM11P1-201ENST00000604951 799 ntBASIC1.21□□□□□ -2.22
SDC1P18827 AL365434.2-201ENST00000607979 234 ntBASIC1.21□□□□□ -2.22
SDC1P18827 AC133104.2-201ENST00000615272 193 ntBASIC1.21□□□□□ -2.22
SDC1P18827 AL353997.5-201ENST00000618886 171 ntBASIC1.21□□□□□ -2.22
SDC1P18827 MIR6079-201ENST00000635807 62 ntBASIC1.21□□□□□ -2.22
SDC1P18827 RNU6-926P-201ENST00000384075 107 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms