Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MIR548B-201ENST00000385247 97 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 SNORA17.3-201ENST00000391159 129 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 RNA5SP465-201ENST00000391195 109 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 MIR1262-201ENST00000408276 93 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 AL158823.1-201ENST00000418441 478 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.67□□□□□ -2.14
HOXD4P09016 RAB28P5-201ENST00000427490 651 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 RPL23AP3-201ENST00000453844 468 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 MTND5P22-201ENST00000458380 195 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 RNU6-625P-201ENST00000459412 107 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 AC010531.2-201ENST00000465012 153 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 MRPS35P2-201ENST00000508242 191 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 AC074133.1-201ENST00000515696 183 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 RNU6-1045P-201ENST00000516321 107 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 SNORA25.15-201ENST00000516487 89 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 CYCSP23-201ENST00000519781 313 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 AP002001.1-203ENST00000534002 267 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 MIR4753-201ENST00000585119 83 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 MIR4781-201ENST00000585250 76 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.67□□□□□ -2.14
HOXD4P09016 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
HOXD4P09016 ZNF702P-202ENST00000434269 1966 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.66□□□□□ -2.14
HOXD4P09016 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
HOXD4P09016 Y_RNA.210-201ENST00000364161 110 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 RNA5SP190-201ENST00000365222 118 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.66□□□□□ -2.14
HOXD4P09016 Y_RNA.459-201ENST00000384251 102 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 SNORD14D-201ENST00000384390 87 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.66□□□□□ -2.14
HOXD4P09016 AC123900.1-201ENST00000420390 96 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 AC096920.1-201ENST00000423991 241 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.66□□□□□ -2.14
HOXD4P09016 AC016717.1-201ENST00000448918 286 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 RNU6-107P-201ENST00000516643 102 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 RNU6-897P-201ENST00000517135 105 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.66□□□□□ -2.14
HOXD4P09016 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.66□□□□□ -2.14
HOXD4P09016 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.66□□□□□ -2.14
HOXD4P09016 AC055872.1-201ENST00000570978 278 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 MIR4255-201ENST00000579351 72 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 Y_RNA.772-201ENST00000606692 102 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.66□□□□□ -2.14
HOXD4P09016 U3.8-201ENST00000363675 217 ntBASIC1.65□□□□□ -2.15
HOXD4P09016 RNU6-1264P-201ENST00000383891 107 ntBASIC1.65□□□□□ -2.15
HOXD4P09016 RNU6-418P-201ENST00000384035 107 ntBASIC1.65□□□□□ -2.15
HOXD4P09016 Y_RNA.439-201ENST00000384119 94 ntBASIC1.65□□□□□ -2.15
HOXD4P09016 RNU6-975P-201ENST00000384296 105 ntBASIC1.65□□□□□ -2.15
HOXD4P09016 Y_RNA.498-201ENST00000384460 102 ntBASIC1.65□□□□□ -2.15
HOXD4P09016 MIR548F4-201ENST00000408515 105 ntBASIC1.65□□□□□ -2.15
HOXD4P09016 RNU2-20P-201ENST00000410425 191 ntBASIC1.65□□□□□ -2.15
HOXD4P09016 AC005002.2-201ENST00000438228 269 ntBASIC1.65□□□□□ -2.15
HOXD4P09016 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.65□□□□□ -2.15
HOXD4P09016 AC073910.1-201ENST00000445047 438 ntBASIC1.65□□□□□ -2.15
HOXD4P09016 AC114982.1-201ENST00000469402 321 ntBASIC1.65□□□□□ -2.15
HOXD4P09016 Y_RNA.105-201ENST00000363182 111 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 Y_RNA.143-201ENST00000363520 106 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 RNU6-457P-201ENST00000363999 107 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 Y_RNA.214-201ENST00000364201 112 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 RNU6-806P-201ENST00000365147 105 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 RNU6-20P-201ENST00000384106 107 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 RNU6-937P-201ENST00000384325 106 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 SNORA67.5-201ENST00000391036 107 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 RPL21P1-201ENST00000399532 476 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.64□□□□□ -2.15
HOXD4P09016 ELOCP20-201ENST00000422460 345 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 AC139712.2-201ENST00000424302 339 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 AL358176.2-201ENST00000425769 204 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 MTCO1P44-201ENST00000441935 243 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 NDUFB4P10-201ENST00000452541 359 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 RNU7-57P-201ENST00000459540 60 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 AL117187.1-201ENST00000555482 181 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 AC136932.1-201ENST00000574771 208 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 AC084768.2-201ENST00000622736 221 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 MIR3674-201ENST00000636576 68 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 WWP1P1-201ENST00000466609 2769 ntBASIC1.64□□□□□ -2.15
HOXD4P09016 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
HOXD4P09016 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
HOXD4P09016 MIR410-201ENST00000362222 80 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 MIR337-201ENST00000362281 93 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 Y_RNA.26-201ENST00000362539 101 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 SNORD115-3-201ENST00000363100 82 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 Y_RNA.99-201ENST00000363138 105 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 RNU6-1309P-201ENST00000363305 108 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 RNU6-626P-201ENST00000363354 107 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 Y_RNA.183-201ENST00000363882 113 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 Y_RNA.276-201ENST00000364732 109 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 RNU6-1235P-201ENST00000384559 107 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 MIR1283-2-201ENST00000408621 87 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 RNU6-121P-201ENST00000410525 99 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 RNU6-57P-201ENST00000411348 103 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.63□□□□□ -2.15
HOXD4P09016 TOMM22P2-201ENST00000430735 237 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.63□□□□□ -2.15
HOXD4P09016 SNORD13-201ENST00000459299 104 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 RNU6-498P-201ENST00000459468 107 ntBASIC1.63□□□□□ -2.15
HOXD4P09016 RNU6-966P-201ENST00000516479 104 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 168.2 ms