Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AP001330.5-201ENST00000607176 411 ntBASIC0.5□□□□□ -2.33
RHBDD3Q9Y3P4 AL096861.1-201ENST00000610899 123 ntBASIC0.5□□□□□ -2.33
RHBDD3Q9Y3P4 AL158209.2-201ENST00000619266 216 ntBASIC0.5□□□□□ -2.33
RHBDD3Q9Y3P4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.5□□□□□ -2.33
RHBDD3Q9Y3P4 Y_RNA.238-201ENST00000364441 102 ntBASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 Y_RNA.481-201ENST00000384373 102 ntBASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 AC104332.1-201ENST00000440471 797 ntBASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 USP9YP29-201ENST00000445112 563 ntBASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 AC093850.1-201ENST00000454121 251 ntBASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 MTCO2P30-201ENST00000503662 364 ntBASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 Z83818.1-201ENST00000603584 150 ntBASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 AC009229.3-201ENST00000608056 282 ntBASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 AL136317.1-201ENST00000612653 226 ntBASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.49□□□□□ -2.33
RHBDD3Q9Y3P4 RNU6-833P-201ENST00000363486 107 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 RNU6-727P-201ENST00000363592 107 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 RNA5SP499-201ENST00000363982 119 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 RNU6-1322P-201ENST00000364309 107 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 RNU6-790P-201ENST00000384479 105 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 MIR10B-201ENST00000385011 110 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 MIR1287-201ENST00000408492 90 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 NDUFA5P4-201ENST00000436704 385 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 AL157398.1-201ENST00000452981 186 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 MTND3P7-201ENST00000474435 343 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 MIR4714-201ENST00000580728 77 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 AC091178.2-201ENST00000584401 117 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 AL117336.2-201ENST00000602435 335 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 FAM157A-202ENST00000615155 405 ntBASIC0.48□□□□□ -2.33
RHBDD3Q9Y3P4 MIRLET7C-201ENST00000362160 84 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 RNA5SP264-201ENST00000363115 107 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 RNU6-42P-201ENST00000384165 107 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 MIR514A2-201ENST00000385131 88 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 MIR514A3-201ENST00000385132 88 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 SNORD89-201ENST00000390981 114 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 MIR891A-201ENST00000401237 79 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 MTCYBP4-201ENST00000401524 249 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 MIR548J-201ENST00000408833 112 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 RNA5SP247-201ENST00000411181 105 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 AC233266.1-201ENST00000454518 96 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 PCMTD1P1-201ENST00000455560 355 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 AC091021.1-201ENST00000468051 388 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 RN7SKP298-201ENST00000515950 94 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 RNU6-1110P-201ENST00000516462 101 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 AC242852.1-201ENST00000612151 96 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 MIR6734-201ENST00000621166 68 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 AC244015.1-201ENST00000622301 99 ntBASIC0.47□□□□□ -2.33
RHBDD3Q9Y3P4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 AC027514.1-201ENST00000588561 1603 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 SNORA1B-201ENST00000362535 133 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 Y_RNA.167-201ENST00000363735 109 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 Y_RNA.267-201ENST00000364679 109 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 RNU4-20P-201ENST00000365601 151 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 Z82188.1-201ENST00000436709 154 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 AC134698.4-201ENST00000523451 826 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 AC104383.1-201ENST00000530297 370 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 MIR3908-201ENST00000579798 126 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 POLR3GP2-201ENST00000588366 668 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 SEPT14P17-201ENST00000617978 177 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 AC009248.2-201ENST00000619826 254 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 AC027279.3-201ENST00000625055 122 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 AC005592.1-201ENST00000566527 1640 ntBASIC0.46□□□□□ -2.34
RHBDD3Q9Y3P4 Y_RNA.226-201ENST00000364337 114 ntBASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 Y_RNA.336-201ENST00000365307 109 ntBASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 MIR520G-201ENST00000385064 90 ntBASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 MTCO1P19-201ENST00000443487 500 ntBASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 MTND3P16-201ENST00000452205 344 ntBASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 AP000870.1-201ENST00000472927 406 ntBASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 ACA59.1-201ENST00000515966 143 ntBASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 RNU6-1278P-201ENST00000516130 107 ntBASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 AC010999.1-201ENST00000611856 324 ntBASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 AC007014.2-201ENST00000615581 479 ntBASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 MIR6788-201ENST00000618842 66 ntBASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.45□□□□□ -2.34
RHBDD3Q9Y3P4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 SNORA69-201ENST00000383895 132 ntBASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 RNU6-376P-201ENST00000384731 106 ntBASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 RNU6-1067P-201ENST00000384752 107 ntBASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 SNORD99-201ENST00000408612 74 ntBASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 RNU4-55P-201ENST00000410731 137 ntBASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 RPL23AP50-201ENST00000434149 455 ntBASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 AC067940.1-201ENST00000458411 300 ntBASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 RNU7-187P-201ENST00000458985 68 ntBASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 CYCTP-201ENST00000504253 315 ntBASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 MTND4LP26-201ENST00000518144 282 ntBASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 AC131055.1-201ENST00000584626 316 ntBASIC0.44□□□□□ -2.34
RHBDD3Q9Y3P4 MIR103A2-201ENST00000362154 78 ntBASIC0.43□□□□□ -2.34
RHBDD3Q9Y3P4 Y_RNA.381-201ENST00000365666 102 ntBASIC0.43□□□□□ -2.34
RHBDD3Q9Y3P4 SNORA20B-201ENST00000384220 132 ntBASIC0.43□□□□□ -2.34
RHBDD3Q9Y3P4 MIR452-201ENST00000385020 85 ntBASIC0.43□□□□□ -2.34
RHBDD3Q9Y3P4 MIR518E-201ENST00000385252 88 ntBASIC0.43□□□□□ -2.34
RHBDD3Q9Y3P4 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC0.43□□□□□ -2.34
RHBDD3Q9Y3P4 AC092423.1-201ENST00000430165 186 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 172.8 ms