Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MCFD2P1-201ENST00000417812 300 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-0.53□□□□□ -2.49
USF3Q68DE3 MTCYBP42-201ENST00000444653 1130 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AC008628.2-201ENST00000502605 298 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AC087894.1-201ENST00000538359 518 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AC133485.4-201ENST00000561835 220 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AL139022.2-201ENST00000606934 443 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AC144521.1-201ENST00000607148 956 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC-0.53□□□□□ -2.49
USF3Q68DE3 AC010999.1-201ENST00000611856 324 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 MTND4P4-201ENST00000439033 1366 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 RNU6-245P-201ENST00000384020 107 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 RNA5SP163-201ENST00000410304 99 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AL158053.1-201ENST00000441503 453 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 ZNF736P12Y-201ENST00000443152 1243 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 MTND1P17-201ENST00000448961 204 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 ZNF736P4Y-201ENST00000454995 1243 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AC079395.1-201ENST00000510981 262 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 RNU6-551P-201ENST00000516661 103 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AC010376.1-201ENST00000522101 334 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AL355375.2-201ENST00000574825 175 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AL670379.3-201ENST00000605040 251 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AC016911.1-201ENST00000613297 452 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AC010608.3-201ENST00000625048 527 ntBASIC-0.53□□□□□ -2.49
USF3Q68DE3 AC073343.1-201ENST00000328239 651 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 RPS29P13-201ENST00000402041 169 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 MIR1185-2-201ENST00000408687 86 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 RNU2-8P-201ENST00000410727 190 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 AC092809.3-201ENST00000415453 231 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC-0.54□□□□□ -2.5
USF3Q68DE3 USP9YP11-201ENST00000427537 717 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 Z98949.2-201ENST00000440996 144 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 AC087499.4-201ENST00000448505 178 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.54□□□□□ -2.5
USF3Q68DE3 RNU6-180P-201ENST00000516697 61 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 AC025647.1-201ENST00000517879 253 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC-0.54□□□□□ -2.5
USF3Q68DE3 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC-0.54□□□□□ -2.5
USF3Q68DE3 MIR4251-201ENST00000635819 61 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 MT-TN-201ENST00000387400 73 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 RNU6-205P-201ENST00000390858 107 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 SNORA26-201ENST00000391286 122 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 PIGPP3-201ENST00000425307 415 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-0.54□□□□□ -2.5
USF3Q68DE3 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC-0.54□□□□□ -2.5
USF3Q68DE3 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 RNU7-28P-201ENST00000516759 62 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 MTND2P38-201ENST00000522536 667 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 AC023442.1-201ENST00000531247 422 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 AC006600.1-201ENST00000572529 153 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 MIR378F-201ENST00000578143 78 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 AC108747.1-201ENST00000609508 535 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 AC006441.5-201ENST00000612680 209 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 AC023158.2-201ENST00000614876 543 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-0.54□□□□□ -2.5
USF3Q68DE3 AL162376.1-201ENST00000624117 175 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 AL008636.1-201ENST00000625038 1018 ntBASIC-0.54□□□□□ -2.5
USF3Q68DE3 SNORD68-201ENST00000363214 84 ntBASIC-0.55□□□□□ -2.5
USF3Q68DE3 RNU6-960P-201ENST00000364056 120 ntBASIC-0.55□□□□□ -2.5
USF3Q68DE3 U8.5-201ENST00000364528 136 ntBASIC-0.55□□□□□ -2.5
USF3Q68DE3 RNU6-190P-201ENST00000384154 102 ntBASIC-0.55□□□□□ -2.5
USF3Q68DE3 SPINT5P-201ENST00000448174 155 ntBASIC-0.55□□□□□ -2.5
USF3Q68DE3 AC117522.1-201ENST00000509821 380 ntBASIC-0.55□□□□□ -2.5
USF3Q68DE3 CR383656.4-201ENST00000546909 122 ntBASIC-0.55□□□□□ -2.5
USF3Q68DE3 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC-0.55□□□□□ -2.5
USF3Q68DE3 AC073539.2-201ENST00000597113 165 ntBASIC-0.55□□□□□ -2.5
USF3Q68DE3 AP000753.3-201ENST00000604083 169 ntBASIC-0.55□□□□□ -2.5
USF3Q68DE3 AC006435.5-201ENST00000624486 112 ntBASIC-0.55□□□□□ -2.5
USF3Q68DE3 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 SNORD83.1-201ENST00000411362 77 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC-0.56□□□□□ -2.5
USF3Q68DE3 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.56□□□□□ -2.5
USF3Q68DE3 BTF3P11-201ENST00000426582 477 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 MRPS10P2-201ENST00000431226 381 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 AF186996.7-201ENST00000492781 209 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC-0.56□□□□□ -2.5
USF3Q68DE3 AC099785.1-201ENST00000605697 437 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 U6.73-201ENST00000619194 103 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 SNORD14.1-201ENST00000365609 90 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 Y_RNA.504-201ENST00000384481 104 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 RNU6-376P-201ENST00000384731 106 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 MIR501-201ENST00000390204 84 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC-0.56□□□□□ -2.5
USF3Q68DE3 AC114878.1-201ENST00000441166 358 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 AL358944.1-201ENST00000528537 144 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 AC090617.3-201ENST00000573670 475 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC-0.56□□□□□ -2.5
USF3Q68DE3 AC087685.1-201ENST00000587507 141 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 MTND4P9-201ENST00000507819 1346 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 AL445523.1-201ENST00000451184 1362 ntBASIC-0.56□□□□□ -2.5
USF3Q68DE3 SNORD115-41-201ENST00000363608 82 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 RNA5SP118-201ENST00000410385 109 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 RNU6-607P-201ENST00000411283 108 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.57□□□□□ -2.5
USF3Q68DE3 AC109479.2-201ENST00000517842 174 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 OR4H6P-202ENST00000603819 340 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 AC246785.4-201ENST00000605374 287 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC-0.57□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms