Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MIR2115-201ENST00000516657 100 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 CR383656.4-201ENST00000546909 122 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 AL590491.3-201ENST00000610731 82 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 AC091304.9-201ENST00000612091 226 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 TCL6_2.1-201ENST00000615162 119 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 AC104260.1-201ENST00000616660 539 ntBASIC-0.94□□□□□ -2.56
CUX1P39880 MIR655-201ENST00000362159 97 ntBASIC-0.95□□□□□ -2.56
CUX1P39880 RNU6-552P-201ENST00000362869 119 ntBASIC-0.95□□□□□ -2.56
CUX1P39880 RNU6-1093P-201ENST00000391194 107 ntBASIC-0.95□□□□□ -2.56
CUX1P39880 AC008134.1-201ENST00000420943 193 ntBASIC-0.95□□□□□ -2.56
CUX1P39880 AC012306.1-201ENST00000423267 114 ntBASIC-0.95□□□□□ -2.56
CUX1P39880 AC079781.2-201ENST00000446424 169 ntBASIC-0.95□□□□□ -2.56
CUX1P39880 AC010486.2-201ENST00000505572 483 ntBASIC-0.95□□□□□ -2.56
CUX1P39880 MIR4771-2-201ENST00000577758 74 ntBASIC-0.95□□□□□ -2.56
CUX1P39880 MIR4771-1-201ENST00000582617 74 ntBASIC-0.95□□□□□ -2.56
CUX1P39880 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-0.95□□□□□ -2.56
CUX1P39880 Six3os1_7.1-201ENST00000621512 201 ntBASIC-0.95□□□□□ -2.56
CUX1P39880 AC027279.3-201ENST00000625055 122 ntBASIC-0.95□□□□□ -2.56
CUX1P39880 RNU6-481P-201ENST00000384194 107 ntBASIC-0.96□□□□□ -2.56
CUX1P39880 MIR586-201ENST00000385035 97 ntBASIC-0.96□□□□□ -2.56
CUX1P39880 MTCO1P17-201ENST00000411522 491 ntBASIC-0.96□□□□□ -2.56
CUX1P39880 RPL21P38-201ENST00000418090 167 ntBASIC-0.96□□□□□ -2.56
CUX1P39880 PCNPP5-201ENST00000452246 481 ntBASIC-0.96□□□□□ -2.56
CUX1P39880 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC-0.96□□□□□ -2.56
CUX1P39880 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC-0.96□□□□□ -2.56
CUX1P39880 AC103996.1-201ENST00000555468 102 ntBASIC-0.96□□□□□ -2.56
CUX1P39880 AC133485.4-201ENST00000561835 220 ntBASIC-0.96□□□□□ -2.56
CUX1P39880 MIR5006-201ENST00000583027 110 ntBASIC-0.96□□□□□ -2.56
CUX1P39880 MIR548AC-201ENST00000585049 88 ntBASIC-0.96□□□□□ -2.56
CUX1P39880 AL596327.1-201ENST00000603629 213 ntBASIC-0.96□□□□□ -2.56
CUX1P39880 AL008636.1-201ENST00000625038 1018 ntBASIC-0.96□□□□□ -2.56
CUX1P39880 MIR101-2-201ENST00000362195 79 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 RNU6-364P-201ENST00000384387 107 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 Y_RNA.498-201ENST00000384460 102 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 MIR208B-201ENST00000401172 77 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 AL355994.1-201ENST00000424379 260 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 AL590623.1-201ENST00000427864 105 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 POLR2KP2-201ENST00000438155 177 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 ZNF736P12Y-201ENST00000443152 1243 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 ZNF736P4Y-201ENST00000454995 1243 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 SCARNA18-201ENST00000459004 134 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 RNU6-150P-201ENST00000516237 95 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC-0.97□□□□□ -2.56
CUX1P39880 MIR3165-201ENST00000579874 75 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 AC008608.1-201ENST00000603910 127 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 AL139286.2-201ENST00000606838 396 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 AC097478.2-201ENST00000610572 514 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 snoZ196.1-201ENST00000625269 89 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 MIR6828-201ENST00000636181 60 ntBASIC-0.97□□□□□ -2.56
CUX1P39880 MIR578-201ENST00000384828 96 ntBASIC-0.98□□□□□ -2.57
CUX1P39880 MIR136-201ENST00000385207 82 ntBASIC-0.98□□□□□ -2.57
CUX1P39880 MT-TN-201ENST00000387400 73 ntBASIC-0.98□□□□□ -2.57
CUX1P39880 MIR802-201ENST00000390235 94 ntBASIC-0.98□□□□□ -2.57
CUX1P39880 MIR1298-201ENST00000408783 112 ntBASIC-0.98□□□□□ -2.57
CUX1P39880 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC-0.98□□□□□ -2.57
CUX1P39880 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC-0.98□□□□□ -2.57
CUX1P39880 RNU6-448P-201ENST00000517052 107 ntBASIC-0.98□□□□□ -2.57
CUX1P39880 AL355375.2-201ENST00000574825 175 ntBASIC-0.98□□□□□ -2.57
CUX1P39880 MIR4789-201ENST00000577469 82 ntBASIC-0.98□□□□□ -2.57
CUX1P39880 DEFB131E-202ENST00000602581 683 ntBASIC-0.98□□□□□ -2.57
CUX1P39880 MIR7107-201ENST00000611489 80 ntBASIC-0.98□□□□□ -2.57
CUX1P39880 AL442067.1-201ENST00000613261 223 ntBASIC-0.98□□□□□ -2.57
CUX1P39880 RNA5SP48-201ENST00000363969 126 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 MIR562-201ENST00000384894 95 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC-0.99□□□□□ -2.57
CUX1P39880 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-0.99□□□□□ -2.57
CUX1P39880 RNU6-123P-201ENST00000516163 102 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 RNU6-1116P-201ENST00000517269 99 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 RNU5A-8P-201ENST00000364102 114 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-0.99□□□□□ -2.57
CUX1P39880 TIMM9P2-201ENST00000419324 266 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 AL512326.2-201ENST00000426359 151 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-0.99□□□□□ -2.57
CUX1P39880 AC015818.7-201ENST00000428754 109 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 AC004386.2-201ENST00000441858 148 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 AC087499.7-201ENST00000441958 109 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC-0.99□□□□□ -2.57
CUX1P39880 AC093303.1-201ENST00000514549 295 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 SCARNA17-201ENST00000516183 144 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 RNA5SP461-201ENST00000516451 104 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 MTND2P38-201ENST00000522536 667 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-0.99□□□□□ -2.57
CUX1P39880 AC010525.2-201ENST00000590920 195 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 AC125232.2-201ENST00000592457 143 ntBASIC-0.99□□□□□ -2.57
CUX1P39880 RNU6-1322P-201ENST00000364309 107 ntBASIC-1□□□□□ -2.57
CUX1P39880 RNU6-811P-201ENST00000384069 107 ntBASIC-1□□□□□ -2.57
CUX1P39880 RNU2-62P-201ENST00000410868 191 ntBASIC-1□□□□□ -2.57
CUX1P39880 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC-1□□□□□ -2.57
CUX1P39880 MTND1P26-201ENST00000440488 538 ntBASIC-1□□□□□ -2.57
CUX1P39880 RNU7-102P-201ENST00000458948 62 ntBASIC-1□□□□□ -2.57
CUX1P39880 MTND1P8-201ENST00000571424 950 ntBASIC-1□□□□□ -2.57
CUX1P39880 MIR3152-201ENST00000579801 74 ntBASIC-1□□□□□ -2.57
CUX1P39880 MIR3925-201ENST00000584674 77 ntBASIC-1□□□□□ -2.57
CUX1P39880 MIR548AD-201ENST00000584780 82 ntBASIC-1□□□□□ -2.57
CUX1P39880 ANKRD20A17P-201ENST00000511745 1330 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 U8.5-201ENST00000364528 136 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 RNU6-1162P-201ENST00000384443 104 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC-1.01□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms