Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MTND3P8-201ENST00000412909 339 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.12□□□□□ -2.23
SHMT2P34897 TOMM22P2-201ENST00000430735 237 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.12□□□□□ -2.23
SHMT2P34897 MTND1P4-201ENST00000435196 415 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 RPS3AP52-201ENST00000435639 297 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 AL135790.2-201ENST00000437701 267 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.12□□□□□ -2.23
SHMT2P34897 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.12□□□□□ -2.23
SHMT2P34897 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 Y_RNA.670-201ENST00000516255 105 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 AC105029.1-201ENST00000520250 669 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 AF235103.2-201ENST00000525753 346 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 AC093023.1-201ENST00000547375 507 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 AL137100.2-201ENST00000555786 315 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.12□□□□□ -2.23
SHMT2P34897 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.12□□□□□ -2.23
SHMT2P34897 AC091895.1-201ENST00000624494 256 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 AC068137.4-201ENST00000638485 296 ntBASIC1.12□□□□□ -2.23
SHMT2P34897 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.12□□□□□ -2.23
SHMT2P34897 RNU6-874P-201ENST00000362390 105 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 Y_RNA.184-201ENST00000363884 108 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 RNU6-593P-201ENST00000364716 112 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 RNU6-950P-201ENST00000384651 107 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 RNU6-1186P-201ENST00000410429 97 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 EIF1P2-201ENST00000428233 350 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 AC245047.3-201ENST00000429428 127 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.11□□□□□ -2.23
SHMT2P34897 MRPS10P1-201ENST00000448483 130 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.11□□□□□ -2.23
SHMT2P34897 SNORD65B-201ENST00000459126 73 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 APOOP3-201ENST00000536787 586 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.11□□□□□ -2.23
SHMT2P34897 AC040896.1-201ENST00000613819 479 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 MIR8054-201ENST00000620877 86 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 MTND5P16-201ENST00000460269 1703 ntBASIC1.11□□□□□ -2.23
SHMT2P34897 Y_RNA.339-201ENST00000365325 102 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 RNU6-53P-201ENST00000365367 106 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 MIR190B-201ENST00000401119 79 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.1□□□□□ -2.23
SHMT2P34897 FCF1P9-201ENST00000412546 282 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.1□□□□□ -2.23
SHMT2P34897 AL591704.2-201ENST00000421658 181 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.1□□□□□ -2.23
SHMT2P34897 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.1□□□□□ -2.23
SHMT2P34897 AC093852.1-201ENST00000503587 266 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 AC046134.1-201ENST00000514454 666 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 RNU7-99P-201ENST00000516271 62 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 RNU6-358P-201ENST00000516564 75 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.1□□□□□ -2.23
SHMT2P34897 AL121579.1-201ENST00000555129 305 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 AC004584.2-201ENST00000570407 410 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 MIR4438-201ENST00000585271 93 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 AC084782.3-201ENST00000612282 578 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.1□□□□□ -2.23
SHMT2P34897 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.1□□□□□ -2.23
SHMT2P34897 SNORA70.7-201ENST00000384159 133 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 RNU6-1065P-201ENST00000384513 106 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 MRPL42P3-201ENST00000401492 326 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 RNU6-1050P-201ENST00000410388 107 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 RPL37P10-201ENST00000412884 288 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 AC074085.1-201ENST00000413598 418 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 FGF7P6-202ENST00000451282 293 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 RPL30P7-201ENST00000479312 323 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.09□□□□□ -2.23
SHMT2P34897 AL512310.8-201ENST00000550183 120 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 AC090617.3-201ENST00000573670 475 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.09□□□□□ -2.23
SHMT2P34897 AC009229.3-201ENST00000608056 282 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 AL357075.2-201ENST00000614906 189 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 AC139792.2-201ENST00000624218 587 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 AC006435.5-201ENST00000624486 112 ntBASIC1.09□□□□□ -2.23
SHMT2P34897 Y_RNA.2-201ENST00000362330 96 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 RNA5SP361-201ENST00000362686 118 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 Y_RNA.72-201ENST00000362894 103 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 Y_RNA.364-201ENST00000365532 101 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 RNA5SP259-201ENST00000365541 109 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 RNU6-601P-201ENST00000384540 107 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 MIR329-1-201ENST00000385028 80 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 ELOCP21-201ENST00000412558 336 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 SNX2P2-201ENST00000424553 323 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.08□□□□□ -2.24
SHMT2P34897 AL353997.1-201ENST00000432936 108 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 AC087343.1-201ENST00000477341 475 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 RNU6-107P-201ENST00000516643 102 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 Y_RNA.708-201ENST00000516950 96 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.08□□□□□ -2.24
SHMT2P34897 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.08□□□□□ -2.24
SHMT2P34897 AC023157.2-201ENST00000540596 141 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 CYP3A52P-201ENST00000563326 91 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.08□□□□□ -2.24
SHMT2P34897 MIR4781-201ENST00000585250 76 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 MIR4295-201ENST00000585286 85 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 AC068790.6-201ENST00000602558 258 ntBASIC1.08□□□□□ -2.24
SHMT2P34897 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SHMT2P34897 AC027514.1-201ENST00000588561 1603 ntBASIC1.07□□□□□ -2.24
SHMT2P34897 Y_RNA.4-201ENST00000362333 112 ntBASIC1.07□□□□□ -2.24
SHMT2P34897 Y_RNA.88-201ENST00000363029 99 ntBASIC1.07□□□□□ -2.24
SHMT2P34897 RNY1P16-201ENST00000363063 111 ntBASIC1.07□□□□□ -2.24
SHMT2P34897 SNORA25.8-201ENST00000364831 128 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms