Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CBX3P8-201ENST00000532412 525 ntBASIC0.77□□□□□ -2.29
USF1P22415 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.77□□□□□ -2.29
USF1P22415 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC0.77□□□□□ -2.29
USF1P22415 AC010525.2-201ENST00000590920 195 ntBASIC0.77□□□□□ -2.29
USF1P22415 AC010620.1-201ENST00000601088 1102 ntBASIC0.77□□□□□ -2.29
USF1P22415 AL162413.1-201ENST00000603198 110 ntBASIC0.77□□□□□ -2.29
USF1P22415 AL138726.1-201ENST00000614873 333 ntBASIC0.77□□□□□ -2.29
USF1P22415 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
USF1P22415 Y_RNA.179-201ENST00000363844 90 ntBASIC0.76□□□□□ -2.29
USF1P22415 RNU2-66P-201ENST00000410650 161 ntBASIC0.76□□□□□ -2.29
USF1P22415 POLR2J4-204ENST00000418424 324 ntBASIC0.76□□□□□ -2.29
USF1P22415 AC063976.4-201ENST00000421971 163 ntBASIC0.76□□□□□ -2.29
USF1P22415 AC245047.7-201ENST00000440265 293 ntBASIC0.76□□□□□ -2.29
USF1P22415 STAG3L5P-204ENST00000443759 179 ntBASIC0.76□□□□□ -2.29
USF1P22415 SNORD65B-201ENST00000459126 73 ntBASIC0.76□□□□□ -2.29
USF1P22415 RPL30P10-201ENST00000488148 337 ntBASIC0.76□□□□□ -2.29
USF1P22415 AC093303.1-201ENST00000514549 295 ntBASIC0.76□□□□□ -2.29
USF1P22415 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.76□□□□□ -2.29
USF1P22415 AC090049.2-201ENST00000550377 109 ntBASIC0.76□□□□□ -2.29
USF1P22415 MIR4778-201ENST00000577635 80 ntBASIC0.76□□□□□ -2.29
USF1P22415 AL020996.3-201ENST00000606617 222 ntBASIC0.76□□□□□ -2.29
USF1P22415 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.75□□□□□ -2.29
USF1P22415 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.75□□□□□ -2.29
USF1P22415 RNU6-1252P-201ENST00000363054 104 ntBASIC0.75□□□□□ -2.29
USF1P22415 Y_RNA.100-201ENST00000363141 102 ntBASIC0.75□□□□□ -2.29
USF1P22415 Y_RNA.184-201ENST00000363884 108 ntBASIC0.75□□□□□ -2.29
USF1P22415 RNU1-36P-201ENST00000365130 165 ntBASIC0.75□□□□□ -2.29
USF1P22415 SNORD116-9-201ENST00000384000 95 ntBASIC0.75□□□□□ -2.29
USF1P22415 SNORD116-3-201ENST00000384287 95 ntBASIC0.75□□□□□ -2.29
USF1P22415 SNORD116-7-201ENST00000384404 95 ntBASIC0.75□□□□□ -2.29
USF1P22415 SNORD116-5-201ENST00000384462 95 ntBASIC0.75□□□□□ -2.29
USF1P22415 Y_RNA.530-201ENST00000384587 101 ntBASIC0.75□□□□□ -2.29
USF1P22415 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
USF1P22415 AL451046.2-201ENST00000403074 277 ntBASIC0.75□□□□□ -2.29
USF1P22415 RPL30P16-201ENST00000419341 429 ntBASIC0.75□□□□□ -2.29
USF1P22415 ZNF885P-201ENST00000420174 1098 ntBASIC0.75□□□□□ -2.29
USF1P22415 AL590632.1-201ENST00000424289 371 ntBASIC0.75□□□□□ -2.29
USF1P22415 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.75□□□□□ -2.29
USF1P22415 AL445305.1-201ENST00000432577 575 ntBASIC0.75□□□□□ -2.29
USF1P22415 MTCO3P18-201ENST00000440206 761 ntBASIC0.75□□□□□ -2.29
USF1P22415 RPS27P22-201ENST00000478056 241 ntBASIC0.75□□□□□ -2.29
USF1P22415 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC0.75□□□□□ -2.29
USF1P22415 AC107401.1-201ENST00000503426 685 ntBASIC0.75□□□□□ -2.29
USF1P22415 RNU6-322P-201ENST00000516010 103 ntBASIC0.75□□□□□ -2.29
USF1P22415 RNU6-1281P-201ENST00000516223 105 ntBASIC0.75□□□□□ -2.29
USF1P22415 SCARNA16.2-201ENST00000516520 172 ntBASIC0.75□□□□□ -2.29
USF1P22415 UBL5P4-201ENST00000562584 236 ntBASIC0.75□□□□□ -2.29
USF1P22415 AC013244.2-201ENST00000603396 103 ntBASIC0.75□□□□□ -2.29
USF1P22415 AC019193.3-201ENST00000609144 554 ntBASIC0.75□□□□□ -2.29
USF1P22415 Z99129.1-201ENST00000612510 255 ntBASIC0.75□□□□□ -2.29
USF1P22415 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.75□□□□□ -2.29
USF1P22415 MIR6079-201ENST00000635807 62 ntBASIC0.75□□□□□ -2.29
USF1P22415 SNORD114-24-201ENST00000365029 72 ntBASIC0.74□□□□□ -2.29
USF1P22415 SNORA2.2-201ENST00000365473 135 ntBASIC0.74□□□□□ -2.29
USF1P22415 SNORD41-201ENST00000386967 70 ntBASIC0.74□□□□□ -2.29
USF1P22415 Y_RNA.615-201ENST00000410769 117 ntBASIC0.74□□□□□ -2.29
USF1P22415 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC0.74□□□□□ -2.29
USF1P22415 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.74□□□□□ -2.29
USF1P22415 AC002429.1-201ENST00000437672 148 ntBASIC0.74□□□□□ -2.29
USF1P22415 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.74□□□□□ -2.29
USF1P22415 AC010469.2-201ENST00000496412 480 ntBASIC0.74□□□□□ -2.29
USF1P22415 AC010598.1-201ENST00000510378 103 ntBASIC0.74□□□□□ -2.29
USF1P22415 SNORD79.1-201ENST00000516069 84 ntBASIC0.74□□□□□ -2.29
USF1P22415 Y_RNA.688-201ENST00000516565 95 ntBASIC0.74□□□□□ -2.29
USF1P22415 RNA5SP168-201ENST00000516642 112 ntBASIC0.74□□□□□ -2.29
USF1P22415 AC134698.4-201ENST00000523451 826 ntBASIC0.74□□□□□ -2.29
USF1P22415 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.74□□□□□ -2.29
USF1P22415 AC023157.2-201ENST00000540596 141 ntBASIC0.74□□□□□ -2.29
USF1P22415 MIR4698-201ENST00000577795 80 ntBASIC0.74□□□□□ -2.29
USF1P22415 MIR5696-201ENST00000578474 85 ntBASIC0.74□□□□□ -2.29
USF1P22415 AL357312.1-201ENST00000603879 298 ntBASIC0.74□□□□□ -2.29
USF1P22415 AC124303.1-201ENST00000605703 360 ntBASIC0.74□□□□□ -2.29
USF1P22415 AC245008.1-201ENST00000608123 476 ntBASIC0.74□□□□□ -2.29
USF1P22415 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.74□□□□□ -2.29
USF1P22415 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.74□□□□□ -2.29
USF1P22415 RNU6-424P-201ENST00000384367 105 ntBASIC0.73□□□□□ -2.29
USF1P22415 RNU6-1105P-201ENST00000384774 107 ntBASIC0.73□□□□□ -2.29
USF1P22415 MIR200A-201ENST00000384875 90 ntBASIC0.73□□□□□ -2.29
USF1P22415 MIR562-201ENST00000384894 95 ntBASIC0.73□□□□□ -2.29
USF1P22415 MTCO3P19-201ENST00000415864 321 ntBASIC0.73□□□□□ -2.29
USF1P22415 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.73□□□□□ -2.29
USF1P22415 HMGN2P26-201ENST00000463169 339 ntBASIC0.73□□□□□ -2.29
USF1P22415 AC019235.1-201ENST00000503847 207 ntBASIC0.73□□□□□ -2.29
USF1P22415 RNU7-175P-201ENST00000515915 61 ntBASIC0.73□□□□□ -2.29
USF1P22415 RNU6-256P-201ENST00000516747 97 ntBASIC0.73□□□□□ -2.29
USF1P22415 RNU7-28P-201ENST00000516759 62 ntBASIC0.73□□□□□ -2.29
USF1P22415 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.73□□□□□ -2.29
USF1P22415 NBR2-204ENST00000587322 63 ntBASIC0.73□□□□□ -2.29
USF1P22415 AC011712.1-201ENST00000588959 234 ntBASIC0.73□□□□□ -2.29
USF1P22415 AC108706.1-201ENST00000611053 297 ntBASIC0.73□□□□□ -2.29
USF1P22415 AC010999.1-201ENST00000611856 324 ntBASIC0.73□□□□□ -2.29
USF1P22415 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
USF1P22415 Y_RNA.135-201ENST00000363439 95 ntBASIC0.72□□□□□ -2.29
USF1P22415 Y_RNA.265-201ENST00000364677 108 ntBASIC0.72□□□□□ -2.29
USF1P22415 RNU1-133P-201ENST00000364867 167 ntBASIC0.72□□□□□ -2.29
USF1P22415 RNU6-483P-201ENST00000384088 108 ntBASIC0.72□□□□□ -2.29
USF1P22415 MIR10B-201ENST00000385011 110 ntBASIC0.72□□□□□ -2.29
USF1P22415 RNU1-139P-201ENST00000391307 165 ntBASIC0.72□□□□□ -2.29
USF1P22415 RNU6-908P-201ENST00000410160 94 ntBASIC0.72□□□□□ -2.29
USF1P22415 AC243428.1-201ENST00000421099 264 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 153.6 ms