Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC009487.2-201ENST00000420969 6821 ntBASIC3.09□□□□□ -1.91
COL6A1P12109 Y_RNA.121-201ENST00000363309 113 ntBASIC3.09□□□□□ -1.91
COL6A1P12109 Y_RNA.238-201ENST00000364441 102 ntBASIC3.09□□□□□ -1.91
COL6A1P12109 RNU6-312P-201ENST00000364629 107 ntBASIC3.09□□□□□ -1.91
COL6A1P12109 SNORA18.2-201ENST00000383865 132 ntBASIC3.09□□□□□ -1.91
COL6A1P12109 U6atac.2-201ENST00000408644 118 ntBASIC3.09□□□□□ -1.91
COL6A1P12109 RNU6-710P-201ENST00000410424 105 ntBASIC3.09□□□□□ -1.91
COL6A1P12109 RPL30P4-201ENST00000429309 333 ntBASIC3.09□□□□□ -1.91
COL6A1P12109 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.09□□□□□ -1.91
COL6A1P12109 RPS29P21-201ENST00000496272 170 ntBASIC3.09□□□□□ -1.91
COL6A1P12109 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.09□□□□□ -1.91
COL6A1P12109 AL078604.3-201ENST00000615580 211 ntBASIC3.09□□□□□ -1.91
COL6A1P12109 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
COL6A1P12109 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
COL6A1P12109 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.09□□□□□ -1.92
COL6A1P12109 AC069528.2-201ENST00000624849 1991 ntBASIC3.09□□□□□ -1.92
COL6A1P12109 Y_RNA.272-201ENST00000364696 102 ntBASIC3.08□□□□□ -1.92
COL6A1P12109 RNU6-1081P-201ENST00000384537 107 ntBASIC3.08□□□□□ -1.92
COL6A1P12109 RNU6-1072P-201ENST00000384703 107 ntBASIC3.08□□□□□ -1.92
COL6A1P12109 RNU6-443P-201ENST00000384780 107 ntBASIC3.08□□□□□ -1.92
COL6A1P12109 Y_RNA.580-201ENST00000391004 95 ntBASIC3.08□□□□□ -1.92
COL6A1P12109 RNU2-63P-201ENST00000410792 194 ntBASIC3.08□□□□□ -1.92
COL6A1P12109 RN7SKP192-201ENST00000411291 327 ntBASIC3.08□□□□□ -1.92
COL6A1P12109 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.08□□□□□ -1.92
COL6A1P12109 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.08□□□□□ -1.92
COL6A1P12109 MIR4658-201ENST00000584344 65 ntBASIC3.08□□□□□ -1.92
COL6A1P12109 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.08□□□□□ -1.92
COL6A1P12109 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL6A1P12109 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL6A1P12109 Y_RNA.23-201ENST00000362496 106 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 RNU6-454P-201ENST00000364292 107 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 SNORD87-201ENST00000364849 89 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 Y_RNA.357-201ENST00000365487 109 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 SNORD116-18-201ENST00000383961 92 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 RPS20P10-201ENST00000451209 253 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.07□□□□□ -1.92
COL6A1P12109 Y_RNA.637-201ENST00000459424 114 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 AC112771.1-201ENST00000463581 102 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 RPS27AP9-201ENST00000477681 438 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 AC005840.1-201ENST00000498412 377 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 AC096725.1-201ENST00000514266 313 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 RN7SKP43-201ENST00000516173 320 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 RNU2-44P-201ENST00000516795 194 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 HSPE1P18-201ENST00000517602 280 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 SUMO2P18-201ENST00000518873 252 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC3.07□□□□□ -1.92
COL6A1P12109 RPL17P51-201ENST00000605218 238 ntBASIC3.07□□□□□ -1.92
COL6A1P12109 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL6A1P12109 Y_RNA.343-201ENST00000365354 112 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 RNU6-449P-201ENST00000383914 107 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 SNORA46-201ENST00000384762 135 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 RNU6-763P-201ENST00000390865 106 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.06□□□□□ -1.92
COL6A1P12109 AL031003.1-201ENST00000404229 172 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 RNU2-2P-201ENST00000410396 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 AC004866.1-201ENST00000411748 78 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.06□□□□□ -1.92
COL6A1P12109 AL451074.5-201ENST00000415894 435 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 EIF4EP4-201ENST00000424916 578 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 AL603825.1-201ENST00000438481 80 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 AC136628.3-201ENST00000521868 290 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 AL670379.2-201ENST00000604983 252 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 RNU2-4P-201ENST00000606190 192 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 U2.15-201ENST00000611544 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 U2.16-201ENST00000613119 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 U2.12-201ENST00000613778 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 U2.9-201ENST00000615427 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 U2.11-201ENST00000616345 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 U2.2-201ENST00000616535 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 U2.3-201ENST00000617785 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 U2.19-201ENST00000618602 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 RNU2-1-201ENST00000618664 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 U2.6-201ENST00000619225 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 U2.5-201ENST00000619465 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 U2.10-201ENST00000620268 191 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 CTSLP2-204ENST00000629029 392 ntBASIC3.06□□□□□ -1.92
COL6A1P12109 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
COL6A1P12109 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL6A1P12109 Y_RNA.75-201ENST00000362927 97 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 U3.8-201ENST00000363675 217 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 Y_RNA.182-201ENST00000363880 111 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 SNORD115-30-201ENST00000364117 82 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 Y_RNA.287-201ENST00000364853 94 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 MIR592-201ENST00000384959 97 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 RNU5E-9P-201ENST00000411164 104 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 SRIP1-201ENST00000489235 288 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.05□□□□□ -1.92
COL6A1P12109 AC245166.1-201ENST00000521012 253 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 IGKV3-31-201ENST00000523109 329 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 AC100767.1-201ENST00000528178 123 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 DEFB131C-201ENST00000528817 165 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.05□□□□□ -1.92
COL6A1P12109 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.05□□□□□ -1.92
COL6A1P12109 AC079598.5-201ENST00000547460 117 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 AC008264.2-201ENST00000610193 3731 ntBASIC3.05□□□□□ -1.92
COL6A1P12109 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.05□□□□□ -1.92
COL6A1P12109 snoU2_19.1-201ENST00000362361 80 ntBASIC3.04□□□□□ -1.92
COL6A1P12109 RNU6-81P-201ENST00000365608 104 ntBASIC3.04□□□□□ -1.92
COL6A1P12109 Y_RNA.412-201ENST00000384001 104 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms