Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 RRN3P3-201ENST00000549207 578 ntBASIC2.8□□□□□ -1.96
NR2E3Q9Y5X4 MIR4781-201ENST00000585250 76 ntBASIC2.8□□□□□ -1.96
NR2E3Q9Y5X4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.8□□□□□ -1.96
NR2E3Q9Y5X4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.8□□□□□ -1.96
NR2E3Q9Y5X4 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.8□□□□□ -1.96
NR2E3Q9Y5X4 AL442067.1-201ENST00000613261 223 ntBASIC2.8□□□□□ -1.96
NR2E3Q9Y5X4 AC141273.2-201ENST00000618989 130 ntBASIC2.8□□□□□ -1.96
NR2E3Q9Y5X4 MIR6873-201ENST00000622788 63 ntBASIC2.8□□□□□ -1.96
NR2E3Q9Y5X4 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
NR2E3Q9Y5X4 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 AL391987.6-201ENST00000305671 199 ntBASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 RNU6-626P-201ENST00000363354 107 ntBASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 RNU1-23P-201ENST00000363361 144 ntBASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 Y_RNA.416-201ENST00000384014 113 ntBASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 RNU6-20P-201ENST00000384106 107 ntBASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 ELOCP21-201ENST00000412558 336 ntBASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 CR769767.1-201ENST00000436337 346 ntBASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 RNU6-1098P-201ENST00000516772 96 ntBASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 AP002001.1-203ENST00000534002 267 ntBASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 MIR4643-201ENST00000577473 78 ntBASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 U4atac.1-201ENST00000618345 95 ntBASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
NR2E3Q9Y5X4 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 AL359511.1-201ENST00000402970 211 ntBASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 AL603910.2-201ENST00000407268 136 ntBASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 RNU4-30P-201ENST00000410245 143 ntBASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 AC245517.4-201ENST00000448601 281 ntBASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 HMGB3P17-201ENST00000504195 649 ntBASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 AC074133.1-201ENST00000515696 183 ntBASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 AC233702.2-202ENST00000562547 291 ntBASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 MIR4635-201ENST00000583759 79 ntBASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.78□□□□□ -1.96
NR2E3Q9Y5X4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 SNORA20.1-201ENST00000364790 130 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 RNU6-290P-201ENST00000365212 101 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 Y_RNA.446-201ENST00000384178 104 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 Y_RNA.478-201ENST00000384358 107 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 Y_RNA.552-201ENST00000384665 112 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 AL033519.2-201ENST00000403958 392 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 RNA5SP504-201ENST00000410676 117 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 MIR449C-201ENST00000516047 92 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 RNA5SP281-201ENST00000516504 135 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 AC068205.3-201ENST00000636385 468 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.77□□□□□ -1.97
NR2E3Q9Y5X4 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.76□□□□□ -1.97
NR2E3Q9Y5X4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.76□□□□□ -1.97
NR2E3Q9Y5X4 Y_RNA.355-201ENST00000365462 98 ntBASIC2.76□□□□□ -1.97
NR2E3Q9Y5X4 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.76□□□□□ -1.97
NR2E3Q9Y5X4 UQCRBP2-201ENST00000447827 297 ntBASIC2.76□□□□□ -1.97
NR2E3Q9Y5X4 RNU7-14P-201ENST00000459331 62 ntBASIC2.76□□□□□ -1.97
NR2E3Q9Y5X4 RNU6-965P-201ENST00000516721 96 ntBASIC2.76□□□□□ -1.97
NR2E3Q9Y5X4 AC021269.2-201ENST00000532318 330 ntBASIC2.76□□□□□ -1.97
NR2E3Q9Y5X4 MIR3605-201ENST00000583214 100 ntBASIC2.76□□□□□ -1.97
NR2E3Q9Y5X4 AL049779.4-201ENST00000604500 156 ntBASIC2.76□□□□□ -1.97
NR2E3Q9Y5X4 AC008873.1-201ENST00000625051 138 ntBASIC2.76□□□□□ -1.97
NR2E3Q9Y5X4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 RNU4-90P-201ENST00000362773 141 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 RNU6-727P-201ENST00000363592 107 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 Y_RNA.352-201ENST00000365439 102 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 RNU6-338P-201ENST00000383888 105 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 MIR300-201ENST00000401138 83 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 AL357139.1-201ENST00000407792 426 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 MIR548H3-201ENST00000408771 118 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 RNU5A-5P-201ENST00000411054 116 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 RNU2-64P-201ENST00000411315 191 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 SERF1AP1-201ENST00000514575 187 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 SNORA9.3-201ENST00000516383 129 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 SCARNA24.2-201ENST00000516968 130 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 AC018448.1-201ENST00000552843 316 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 SNORD113-5-201ENST00000607261 78 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 MIR1248-201ENST00000629190 106 ntBASIC2.75□□□□□ -1.97
NR2E3Q9Y5X4 AL356292.1-201ENST00000283110 373 ntBASIC2.74□□□□□ -1.97
NR2E3Q9Y5X4 MIR6073-201ENST00000352083 89 ntBASIC2.74□□□□□ -1.97
NR2E3Q9Y5X4 MIR337-201ENST00000362281 93 ntBASIC2.74□□□□□ -1.97
NR2E3Q9Y5X4 Y_RNA.101-201ENST00000363154 102 ntBASIC2.74□□□□□ -1.97
NR2E3Q9Y5X4 SNORD27-201ENST00000363981 72 ntBASIC2.74□□□□□ -1.97
NR2E3Q9Y5X4 RNY1-201ENST00000364228 113 ntBASIC2.74□□□□□ -1.97
NR2E3Q9Y5X4 Y_RNA.230-201ENST00000364348 109 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 262.1 ms