Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.32□□□□□ -2.04
PAAF1Q9BRP4 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.32□□□□□ -2.04
PAAF1Q9BRP4 RNU2-34P-201ENST00000516534 121 ntBASIC2.32□□□□□ -2.04
PAAF1Q9BRP4 SCARNA16.3-201ENST00000516595 184 ntBASIC2.32□□□□□ -2.04
PAAF1Q9BRP4 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.32□□□□□ -2.04
PAAF1Q9BRP4 AC006001.4-201ENST00000622243 395 ntBASIC2.32□□□□□ -2.04
PAAF1Q9BRP4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.32□□□□□ -2.04
PAAF1Q9BRP4 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
PAAF1Q9BRP4 Y_RNA.47-201ENST00000362697 108 ntBASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 Y_RNA.64-201ENST00000362845 102 ntBASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 RPL21P1-201ENST00000399532 476 ntBASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 Y_RNA.602-201ENST00000410535 92 ntBASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 RNU6-155P-201ENST00000516347 100 ntBASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 RNA5SP200-201ENST00000516360 103 ntBASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 MIR5194-201ENST00000582634 120 ntBASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
PAAF1Q9BRP4 MIR6073-201ENST00000352083 89 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 SNORD113-8-201ENST00000363497 74 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 RNU6-806P-201ENST00000365147 105 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 Y_RNA.331-201ENST00000365267 102 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 RNU1-138P-201ENST00000384093 164 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 SNORD63-201ENST00000384262 68 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 Y_RNA.574-201ENST00000384766 95 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 MIR29C-201ENST00000385231 88 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 MIR1253-201ENST00000408273 105 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 RNU4-30P-201ENST00000410245 143 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 RNU2-2P-201ENST00000410396 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 AC008134.1-201ENST00000420943 193 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 MTND3P2-201ENST00000438452 342 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 LINC01399-202ENST00000458450 244 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 RNU6-826P-201ENST00000516827 104 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 AP003733.2-201ENST00000529409 171 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 AC136932.1-201ENST00000574771 208 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 MIR4300-201ENST00000581016 96 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.15-201ENST00000611544 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.16-201ENST00000613119 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.12-201ENST00000613778 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.20-201ENST00000613956 192 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.9-201ENST00000615427 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.11-201ENST00000616345 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.2-201ENST00000616535 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.3-201ENST00000617785 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.19-201ENST00000618602 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 RNU2-1-201ENST00000618664 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.6-201ENST00000619225 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.5-201ENST00000619465 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 U2.10-201ENST00000620268 191 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 MIR219B-201ENST00000637023 88 ntBASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
PAAF1Q9BRP4 Z82195.2-201ENST00000612348 18351 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 AC009487.4-201ENST00000624969 3585 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 AL159152.1-201ENST00000635019 2587 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 MIR410-201ENST00000362222 80 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 RNA5SP393-201ENST00000363423 117 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 RNU6-324P-201ENST00000363957 106 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 Y_RNA.512-201ENST00000384518 102 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 Y_RNA.570-201ENST00000384750 101 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 MIR548F4-201ENST00000408515 105 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 MTCO1P44-201ENST00000441935 243 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 RNU6-221P-201ENST00000459541 99 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 SEPT14P8-201ENST00000508026 178 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 AP002001.1-203ENST00000534002 267 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 AC004486.1-201ENST00000546846 233 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 AC055872.1-201ENST00000570978 278 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 SNORD14A-201ENST00000606526 91 ntBASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.29□□□□□ -2.04
PAAF1Q9BRP4 Y_RNA.26-201ENST00000362539 101 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 Y_RNA.101-201ENST00000363154 102 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 RNU6-23P-201ENST00000363283 107 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 Y_RNA.222-201ENST00000364264 102 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 RNU1-52P-201ENST00000384190 164 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 SNORD115-46-201ENST00000390982 71 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 RNA5SP181-201ENST00000410246 98 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 AC005042.3-201ENST00000453230 174 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 HMGN1P10-201ENST00000474557 553 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 RNA5SP137-201ENST00000516833 135 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 MIR3670-2-201ENST00000582974 65 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 MIR3670-1-201ENST00000584160 65 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 MIR3670-3-201ENST00000584855 65 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 SNORD113-5-201ENST00000607261 78 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 MIR3670-4-201ENST00000612260 65 ntBASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.28□□□□□ -2.04
PAAF1Q9BRP4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 359.7 ms