Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 SUMO2P16-201ENST00000519475 264 ntBASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 AC004584.2-201ENST00000570407 410 ntBASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 MIR3664-201ENST00000579074 99 ntBASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 MIR8065-201ENST00000620577 100 ntBASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.03□□□□□ -2.24
TRIM40Q6P9F5 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.9-201ENST00000362354 101 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 RNY4P14-201ENST00000363656 96 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.179-201ENST00000363844 90 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.533-201ENST00000384596 114 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 MIR10B-201ENST00000385011 110 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 MRPL42P3-201ENST00000401492 326 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 AL356776.1-201ENST00000406574 447 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 PGBD4P5-201ENST00000445958 426 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 MTND4P18-201ENST00000447010 465 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 AP000870.1-201ENST00000472927 406 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 AL133373.1-201ENST00000497098 94 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 RNU7-99P-201ENST00000516271 62 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 RN7SKP88-201ENST00000516847 250 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 RNU6-1314P-201ENST00000517139 104 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 AL590705.4-201ENST00000532209 134 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 MIR4273-201ENST00000582824 84 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 AC080013.6-201ENST00000606185 215 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 7SK.8-201ENST00000612110 250 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 7SK.11-201ENST00000615477 250 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 7SK.13-201ENST00000622040 250 ntBASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
TRIM40Q6P9F5 ZNF299P-201ENST00000406845 1804 ntBASIC1.01□□□□□ -2.25
TRIM40Q6P9F5 RNU1-22P-201ENST00000363334 158 ntBASIC1.01□□□□□ -2.25
TRIM40Q6P9F5 SNORA25.8-201ENST00000364831 128 ntBASIC1.01□□□□□ -2.25
TRIM40Q6P9F5 AC009161.1-201ENST00000417306 376 ntBASIC1.01□□□□□ -2.25
TRIM40Q6P9F5 MTATP6P26-201ENST00000445926 662 ntBASIC1.01□□□□□ -2.25
TRIM40Q6P9F5 RNU6-273P-201ENST00000516937 96 ntBASIC1.01□□□□□ -2.25
TRIM40Q6P9F5 APOOP3-201ENST00000536787 586 ntBASIC1.01□□□□□ -2.25
TRIM40Q6P9F5 AC080078.3-201ENST00000605407 463 ntBASIC1.01□□□□□ -2.25
TRIM40Q6P9F5 AL355802.3-201ENST00000607571 545 ntBASIC1.01□□□□□ -2.25
TRIM40Q6P9F5 AC010999.1-201ENST00000611856 324 ntBASIC1.01□□□□□ -2.25
TRIM40Q6P9F5 RNU6-595P-201ENST00000363944 107 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.436-201ENST00000384097 102 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.490-201ENST00000384413 102 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.554-201ENST00000384672 102 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 RNU6-440P-201ENST00000390882 105 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1□□□□□ -2.25
TRIM40Q6P9F5 RNU7-94P-201ENST00000459576 63 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 RPL39P38-201ENST00000467018 153 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 COX6CP14-201ENST00000469580 174 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 RNU6-1088P-201ENST00000516850 104 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1□□□□□ -2.25
TRIM40Q6P9F5 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1□□□□□ -2.25
TRIM40Q6P9F5 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1□□□□□ -2.25
TRIM40Q6P9F5 MIR8070-201ENST00000616510 88 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 AC099654.5-201ENST00000636479 350 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 AC068137.4-201ENST00000638485 296 ntBASIC1□□□□□ -2.25
TRIM40Q6P9F5 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.89-201ENST00000363031 102 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.157-201ENST00000363638 102 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.184-201ENST00000363884 108 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.405-201ENST00000383979 100 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.451-201ENST00000384200 100 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.524-201ENST00000384564 100 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.561-201ENST00000384694 100 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 SNORA12.1-201ENST00000390873 148 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 AL034345.1-201ENST00000407768 123 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 RNA5SP118-201ENST00000410385 109 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 RNU6-1148P-201ENST00000410992 104 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 AC016907.1-201ENST00000419483 435 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 USMG5P1-201ENST00000425964 177 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 MTND3P23-201ENST00000431980 347 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 SNORD65B-201ENST00000459126 73 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 MIR5695-201ENST00000579717 85 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 MIR4438-201ENST00000585271 93 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 SNORD114-21-201ENST00000606412 72 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 AL513423.1-201ENST00000621695 132 ntBASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.99□□□□□ -2.25
TRIM40Q6P9F5 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 RNU6-1013P-201ENST00000384180 107 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.450-201ENST00000384198 113 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 RNU6-831P-201ENST00000384548 107 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 RNU1-139P-201ENST00000391307 165 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 MTND4LP16-201ENST00000440828 295 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 MRPS10P1-201ENST00000448483 130 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 MTND1P17-201ENST00000448961 204 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 RNU6-1114P-201ENST00000516022 107 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.683-201ENST00000516508 93 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 RNU6-566P-201ENST00000516790 107 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 RNA5SP102-201ENST00000516865 106 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 RNU1-54P-201ENST00000517181 120 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 AC091144.1-201ENST00000519573 138 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 EIF1P4-201ENST00000572664 335 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 AL162424.1-201ENST00000602325 221 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 135.9 ms