Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 RN7SKP295-201ENST00000517264 153 ntBASIC1.44□□□□□ -2.18
SHHQ15465 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.44□□□□□ -2.18
SHHQ15465 DEFB131C-201ENST00000528817 165 ntBASIC1.44□□□□□ -2.18
SHHQ15465 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.44□□□□□ -2.18
SHHQ15465 UBL5P4-201ENST00000562584 236 ntBASIC1.44□□□□□ -2.18
SHHQ15465 MIR5690-201ENST00000583739 73 ntBASIC1.44□□□□□ -2.18
SHHQ15465 AC104695.3-201ENST00000604052 296 ntBASIC1.44□□□□□ -2.18
SHHQ15465 AC016925.2-201ENST00000605108 242 ntBASIC1.44□□□□□ -2.18
SHHQ15465 PISRT1.1-201ENST00000616930 107 ntBASIC1.44□□□□□ -2.18
SHHQ15465 AL159153.1-201ENST00000619688 317 ntBASIC1.44□□□□□ -2.18
SHHQ15465 AC091925.1-201ENST00000623204 462 ntBASIC1.44□□□□□ -2.18
SHHQ15465 AC134503.1-201ENST00000633048 54 ntBASIC1.44□□□□□ -2.18
SHHQ15465 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.44□□□□□ -2.18
SHHQ15465 AC009541.1-201ENST00000438279 2662 ntBASIC1.43□□□□□ -2.18
SHHQ15465 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
SHHQ15465 RNY1P16-201ENST00000363063 111 ntBASIC1.43□□□□□ -2.18
SHHQ15465 SNORA33.2-201ENST00000365413 134 ntBASIC1.43□□□□□ -2.18
SHHQ15465 SNORA29-201ENST00000384183 140 ntBASIC1.43□□□□□ -2.18
SHHQ15465 Y_RNA.504-201ENST00000384481 104 ntBASIC1.43□□□□□ -2.18
SHHQ15465 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
SHHQ15465 Y_RNA.605-201ENST00000410577 105 ntBASIC1.43□□□□□ -2.18
SHHQ15465 AC004866.1-201ENST00000411748 78 ntBASIC1.43□□□□□ -2.18
SHHQ15465 AC236972.2-201ENST00000434979 310 ntBASIC1.43□□□□□ -2.18
SHHQ15465 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.43□□□□□ -2.18
SHHQ15465 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.43□□□□□ -2.18
SHHQ15465 AC012308.1-201ENST00000451232 178 ntBASIC1.43□□□□□ -2.18
SHHQ15465 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.43□□□□□ -2.18
SHHQ15465 AC021146.2-201ENST00000504736 556 ntBASIC1.43□□□□□ -2.18
SHHQ15465 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.43□□□□□ -2.18
SHHQ15465 MIR5696-201ENST00000578474 85 ntBASIC1.43□□□□□ -2.18
SHHQ15465 MIR5701-3-201ENST00000578890 82 ntBASIC1.43□□□□□ -2.18
SHHQ15465 MIR4680-201ENST00000580906 66 ntBASIC1.43□□□□□ -2.18
SHHQ15465 MIR4273-201ENST00000582824 84 ntBASIC1.43□□□□□ -2.18
SHHQ15465 MIR5701-1-201ENST00000585138 82 ntBASIC1.43□□□□□ -2.18
SHHQ15465 AC092447.9-201ENST00000603395 144 ntBASIC1.43□□□□□ -2.18
SHHQ15465 AC016727.2-201ENST00000603988 621 ntBASIC1.43□□□□□ -2.18
SHHQ15465 AL355802.3-201ENST00000607571 545 ntBASIC1.43□□□□□ -2.18
SHHQ15465 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.43□□□□□ -2.18
SHHQ15465 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.43□□□□□ -2.18
SHHQ15465 MIR8076-201ENST00000611401 83 ntBASIC1.43□□□□□ -2.18
SHHQ15465 MIR5701-2-201ENST00000615634 82 ntBASIC1.43□□□□□ -2.18
SHHQ15465 AC007792.1-201ENST00000623023 402 ntBASIC1.43□□□□□ -2.18
SHHQ15465 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SHHQ15465 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.42□□□□□ -2.18
SHHQ15465 snoU2_19.1-201ENST00000362361 80 ntBASIC1.42□□□□□ -2.18
SHHQ15465 Y_RNA.28-201ENST00000362554 111 ntBASIC1.42□□□□□ -2.18
SHHQ15465 RNU6-655P-201ENST00000362858 107 ntBASIC1.42□□□□□ -2.18
SHHQ15465 RNU6-227P-201ENST00000362865 103 ntBASIC1.42□□□□□ -2.18
SHHQ15465 Y_RNA.128-201ENST00000363391 112 ntBASIC1.42□□□□□ -2.18
SHHQ15465 RNU6-595P-201ENST00000363944 107 ntBASIC1.42□□□□□ -2.18
SHHQ15465 RNU6-806P-201ENST00000365147 105 ntBASIC1.42□□□□□ -2.18
SHHQ15465 SNORD14D-201ENST00000384390 87 ntBASIC1.42□□□□□ -2.18
SHHQ15465 RNU6-1274P-201ENST00000384557 107 ntBASIC1.42□□□□□ -2.18
SHHQ15465 MIR606-201ENST00000384851 96 ntBASIC1.42□□□□□ -2.18
SHHQ15465 MIR222-201ENST00000384992 110 ntBASIC1.42□□□□□ -2.18
SHHQ15465 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
SHHQ15465 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
SHHQ15465 AC092423.1-201ENST00000430165 186 ntBASIC1.42□□□□□ -2.18
SHHQ15465 AL035666.1-201ENST00000446195 348 ntBASIC1.42□□□□□ -2.18
SHHQ15465 RPL39P29-201ENST00000447779 157 ntBASIC1.42□□□□□ -2.18
SHHQ15465 RPL23AP75-201ENST00000491601 451 ntBASIC1.42□□□□□ -2.18
SHHQ15465 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.42□□□□□ -2.18
SHHQ15465 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.42□□□□□ -2.18
SHHQ15465 RNU6-1170P-201ENST00000515974 106 ntBASIC1.42□□□□□ -2.18
SHHQ15465 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.42□□□□□ -2.18
SHHQ15465 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.42□□□□□ -2.18
SHHQ15465 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.42□□□□□ -2.18
SHHQ15465 AC018889.1-201ENST00000605372 397 ntBASIC1.42□□□□□ -2.18
SHHQ15465 AC011476.5-201ENST00000615594 130 ntBASIC1.42□□□□□ -2.18
SHHQ15465 AL132822.1-201ENST00000617063 513 ntBASIC1.42□□□□□ -2.18
SHHQ15465 MTND5P9-201ENST00000503854 1755 ntBASIC1.42□□□□□ -2.18
SHHQ15465 MTND5P10-201ENST00000603719 1809 ntBASIC1.41□□□□□ -2.18
SHHQ15465 RNU6-212P-201ENST00000362642 104 ntBASIC1.41□□□□□ -2.18
SHHQ15465 RNA5SP361-201ENST00000362686 118 ntBASIC1.41□□□□□ -2.18
SHHQ15465 Y_RNA.105-201ENST00000363182 111 ntBASIC1.41□□□□□ -2.18
SHHQ15465 RNU6-1285P-201ENST00000363480 105 ntBASIC1.41□□□□□ -2.18
SHHQ15465 RNA5SP363-201ENST00000365072 115 ntBASIC1.41□□□□□ -2.18
SHHQ15465 Y_RNA.314-201ENST00000365114 102 ntBASIC1.41□□□□□ -2.18
SHHQ15465 Y_RNA.358-201ENST00000365491 99 ntBASIC1.41□□□□□ -2.18
SHHQ15465 RNU6-546P-201ENST00000383991 107 ntBASIC1.41□□□□□ -2.18
SHHQ15465 RNU6-933P-201ENST00000384424 107 ntBASIC1.41□□□□□ -2.18
SHHQ15465 MIR568-201ENST00000385036 95 ntBASIC1.41□□□□□ -2.18
SHHQ15465 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
SHHQ15465 RNU6-1156P-201ENST00000410365 100 ntBASIC1.41□□□□□ -2.18
SHHQ15465 RNU2-32P-201ENST00000411193 191 ntBASIC1.41□□□□□ -2.18
SHHQ15465 AC009310.1-201ENST00000414414 451 ntBASIC1.41□□□□□ -2.18
SHHQ15465 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.41□□□□□ -2.18
SHHQ15465 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.41□□□□□ -2.18
SHHQ15465 NCOR1P3-201ENST00000420479 303 ntBASIC1.41□□□□□ -2.18
SHHQ15465 RPL23AP95-201ENST00000426806 265 ntBASIC1.41□□□□□ -2.18
SHHQ15465 CBX3P6-201ENST00000430257 527 ntBASIC1.41□□□□□ -2.18
SHHQ15465 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.41□□□□□ -2.18
SHHQ15465 U8.20-201ENST00000459445 131 ntBASIC1.41□□□□□ -2.18
SHHQ15465 AC010655.3-201ENST00000478818 450 ntBASIC1.41□□□□□ -2.18
SHHQ15465 RNU5F-2P-201ENST00000516066 82 ntBASIC1.41□□□□□ -2.18
SHHQ15465 RNU6-966P-201ENST00000516479 104 ntBASIC1.41□□□□□ -2.18
SHHQ15465 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.41□□□□□ -2.18
SHHQ15465 AC022616.8-201ENST00000533569 253 ntBASIC1.41□□□□□ -2.18
SHHQ15465 HSPE1P4-201ENST00000550617 308 ntBASIC1.41□□□□□ -2.18
SHHQ15465 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms