Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 RNA5SP299-201ENST00000391203 116 ntBASIC0.11□□□□□ -2.39
APOEP02649 RNU6-177P-201ENST00000411257 104 ntBASIC0.11□□□□□ -2.39
APOEP02649 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.11□□□□□ -2.39
APOEP02649 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.11□□□□□ -2.39
APOEP02649 MRPS10P1-201ENST00000448483 130 ntBASIC0.11□□□□□ -2.39
APOEP02649 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC0.11□□□□□ -2.39
APOEP02649 AC010469.2-201ENST00000496412 480 ntBASIC0.11□□□□□ -2.39
APOEP02649 RNU6-430P-201ENST00000517078 107 ntBASIC0.11□□□□□ -2.39
APOEP02649 MTND1P35-201ENST00000526739 508 ntBASIC0.11□□□□□ -2.39
APOEP02649 HIF1AP1-201ENST00000553642 175 ntBASIC0.11□□□□□ -2.39
APOEP02649 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.11□□□□□ -2.39
APOEP02649 SNORA1B-201ENST00000362535 133 ntBASIC0.1□□□□□ -2.39
APOEP02649 Y_RNA.336-201ENST00000365307 109 ntBASIC0.1□□□□□ -2.39
APOEP02649 RNU6-282P-201ENST00000365357 103 ntBASIC0.1□□□□□ -2.39
APOEP02649 RNU2-29P-201ENST00000410423 189 ntBASIC0.1□□□□□ -2.39
APOEP02649 SNORD65B-201ENST00000459126 73 ntBASIC0.1□□□□□ -2.39
APOEP02649 AC091021.1-201ENST00000468051 388 ntBASIC0.1□□□□□ -2.39
APOEP02649 RNU7-28P-201ENST00000516759 62 ntBASIC0.1□□□□□ -2.39
APOEP02649 AC087854.1-201ENST00000519706 414 ntBASIC0.1□□□□□ -2.39
APOEP02649 AF235103.2-201ENST00000525753 346 ntBASIC0.1□□□□□ -2.39
APOEP02649 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.1□□□□□ -2.39
APOEP02649 AL008636.1-201ENST00000625038 1018 ntBASIC0.1□□□□□ -2.39
APOEP02649 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.09□□□□□ -2.39
APOEP02649 RNU6-456P-201ENST00000384493 107 ntBASIC0.09□□□□□ -2.4
APOEP02649 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.09□□□□□ -2.4
APOEP02649 RNU6-903P-201ENST00000391270 109 ntBASIC0.09□□□□□ -2.4
APOEP02649 MIR1295A-201ENST00000408463 79 ntBASIC0.09□□□□□ -2.4
APOEP02649 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.09□□□□□ -2.4
APOEP02649 U8.21-201ENST00000459536 136 ntBASIC0.09□□□□□ -2.4
APOEP02649 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.09□□□□□ -2.4
APOEP02649 AC104576.1-201ENST00000524225 88 ntBASIC0.09□□□□□ -2.4
APOEP02649 AP003461.1-201ENST00000528866 78 ntBASIC0.09□□□□□ -2.4
APOEP02649 AC007684.1-201ENST00000609671 477 ntBASIC0.09□□□□□ -2.4
APOEP02649 AC087683.2-201ENST00000611384 326 ntBASIC0.09□□□□□ -2.4
APOEP02649 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.09□□□□□ -2.4
APOEP02649 AC008133.2-201ENST00000624540 351 ntBASIC0.09□□□□□ -2.4
APOEP02649 FER-210ENST00000628534 558 ntTSL 5 BASIC0.09□□□□□ -2.4
APOEP02649 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.09□□□□□ -2.4
APOEP02649 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.08□□□□□ -2.4
APOEP02649 MIR1827-201ENST00000408549 66 ntBASIC0.08□□□□□ -2.4
APOEP02649 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.08□□□□□ -2.4
APOEP02649 RNU2-9P-201ENST00000410194 145 ntBASIC0.08□□□□□ -2.4
APOEP02649 AL358176.2-201ENST00000425769 204 ntBASIC0.08□□□□□ -2.4
APOEP02649 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.08□□□□□ -2.4
APOEP02649 AC005178.1-201ENST00000508392 440 ntBASIC0.08□□□□□ -2.4
APOEP02649 AC105313.1-201ENST00000509121 353 ntBASIC0.08□□□□□ -2.4
APOEP02649 RNU7-41P-201ENST00000515917 61 ntBASIC0.08□□□□□ -2.4
APOEP02649 RN7SKP164-201ENST00000516138 266 ntBASIC0.08□□□□□ -2.4
APOEP02649 AP001372.4-201ENST00000524889 472 ntBASIC0.08□□□□□ -2.4
APOEP02649 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
APOEP02649 AC104383.1-201ENST00000530297 370 ntBASIC0.08□□□□□ -2.4
APOEP02649 MIR4300-201ENST00000581016 96 ntBASIC0.08□□□□□ -2.4
APOEP02649 AL391834.2-201ENST00000609982 546 ntBASIC0.08□□□□□ -2.4
APOEP02649 MIR8087-201ENST00000612745 78 ntBASIC0.08□□□□□ -2.4
APOEP02649 RNU6-727P-201ENST00000363592 107 ntBASIC0.07□□□□□ -2.4
APOEP02649 Y_RNA.415-201ENST00000384012 112 ntBASIC0.07□□□□□ -2.4
APOEP02649 RNU6-606P-201ENST00000384721 111 ntBASIC0.07□□□□□ -2.4
APOEP02649 SNORD111-201ENST00000408139 94 ntBASIC0.07□□□□□ -2.4
APOEP02649 NDUFB4P10-201ENST00000452541 359 ntBASIC0.07□□□□□ -2.4
APOEP02649 OFD1P4Y-201ENST00000455273 1179 ntBASIC0.07□□□□□ -2.4
APOEP02649 RPL23AP75-201ENST00000491601 451 ntBASIC0.07□□□□□ -2.4
APOEP02649 AC097462.1-201ENST00000514125 324 ntBASIC0.07□□□□□ -2.4
APOEP02649 MIR4431-201ENST00000579990 94 ntBASIC0.07□□□□□ -2.4
APOEP02649 MIR6718-201ENST00000616153 80 ntBASIC0.07□□□□□ -2.4
APOEP02649 uc_338.34-201ENST00000617467 174 ntBASIC0.07□□□□□ -2.4
APOEP02649 Y_RNA.205-201ENST00000364128 113 ntBASIC0.06□□□□□ -2.4
APOEP02649 Y_RNA.476-201ENST00000384347 108 ntBASIC0.06□□□□□ -2.4
APOEP02649 RNA5SP219-201ENST00000390940 113 ntBASIC0.06□□□□□ -2.4
APOEP02649 RNA5SP482-201ENST00000391269 118 ntBASIC0.06□□□□□ -2.4
APOEP02649 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.06□□□□□ -2.4
APOEP02649 AL593851.1-201ENST00000426171 157 ntBASIC0.06□□□□□ -2.4
APOEP02649 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
APOEP02649 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.06□□□□□ -2.4
APOEP02649 RNU6-1096P-201ENST00000517089 102 ntBASIC0.06□□□□□ -2.4
APOEP02649 RNU7-172P-201ENST00000517125 64 ntBASIC0.06□□□□□ -2.4
APOEP02649 AP003327.1-201ENST00000529684 127 ntBASIC0.06□□□□□ -2.4
APOEP02649 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.06□□□□□ -2.4
APOEP02649 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.06□□□□□ -2.4
APOEP02649 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
APOEP02649 RNU6-245P-201ENST00000384020 107 ntBASIC0.05□□□□□ -2.4
APOEP02649 MIR891A-201ENST00000401237 79 ntBASIC0.05□□□□□ -2.4
APOEP02649 MTCO2P8-201ENST00000412213 658 ntBASIC0.05□□□□□ -2.4
APOEP02649 ZNF885P-201ENST00000420174 1098 ntBASIC0.05□□□□□ -2.4
APOEP02649 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.05□□□□□ -2.4
APOEP02649 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.05□□□□□ -2.4
APOEP02649 Z98949.2-201ENST00000440996 144 ntBASIC0.05□□□□□ -2.4
APOEP02649 ZNF736P12Y-201ENST00000443152 1243 ntBASIC0.05□□□□□ -2.4
APOEP02649 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.05□□□□□ -2.4
APOEP02649 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.05□□□□□ -2.4
APOEP02649 AC107401.1-201ENST00000503426 685 ntBASIC0.05□□□□□ -2.4
APOEP02649 SNORA25.14-201ENST00000516481 132 ntBASIC0.05□□□□□ -2.4
APOEP02649 RNU6-1291P-201ENST00000516591 104 ntBASIC0.05□□□□□ -2.4
APOEP02649 RNU6-341P-201ENST00000516973 96 ntBASIC0.05□□□□□ -2.4
APOEP02649 AP002963.1-201ENST00000530590 184 ntBASIC0.05□□□□□ -2.4
APOEP02649 AP002004.2-201ENST00000531656 154 ntBASIC0.05□□□□□ -2.4
APOEP02649 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.05□□□□□ -2.4
APOEP02649 SCOCP1-201ENST00000554676 349 ntBASIC0.05□□□□□ -2.4
APOEP02649 AC091178.2-201ENST00000584401 117 ntBASIC0.05□□□□□ -2.4
APOEP02649 RNU6-833P-201ENST00000363486 107 ntBASIC0.04□□□□□ -2.4
APOEP02649 RNU4-45P-201ENST00000365469 141 ntBASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms