Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.09□□□□□ -2.07
LMX1BO60663 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.09□□□□□ -2.07
LMX1BO60663 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.09□□□□□ -2.07
LMX1BO60663 AL713866.2-201ENST00000603579 219 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 BX284668.6-201ENST00000606899 438 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 MIR7515-201ENST00000637837 67 ntBASIC2.09□□□□□ -2.07
LMX1BO60663 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
LMX1BO60663 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.08□□□□□ -2.08
LMX1BO60663 Y_RNA.54-201ENST00000362766 105 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 Y_RNA.65-201ENST00000362846 100 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 RNU6-944P-201ENST00000364023 107 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 SNORD114-30-201ENST00000364448 72 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 Y_RNA.274-201ENST00000364714 101 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 RNU6-740P-201ENST00000364734 105 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 Y_RNA.331-201ENST00000365267 102 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 RNU6-1274P-201ENST00000384557 107 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 AL356320.1-201ENST00000429616 163 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 AC104389.3-201ENST00000445629 235 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 MRPS10P1-201ENST00000448483 130 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 RNU2-12P-201ENST00000517216 168 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 RPL21P9-201ENST00000556149 474 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 MIR5006-201ENST00000583027 110 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 AL109918.3-201ENST00000603072 338 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 AC068205.3-201ENST00000636385 468 ntBASIC2.08□□□□□ -2.08
LMX1BO60663 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
LMX1BO60663 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
LMX1BO60663 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LMX1BO60663 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
LMX1BO60663 ZNF271P-202ENST00000465539 1970 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 Y_RNA.44-201ENST00000362676 108 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 Y_RNA.122-201ENST00000363331 96 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 RNA5SP393-201ENST00000363423 117 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 Y_RNA.383-201ENST00000383855 97 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 RNU6-21P-201ENST00000384710 107 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 RNU2-54P-201ENST00000410299 190 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.07□□□□□ -2.08
LMX1BO60663 AL390729.2-201ENST00000416137 156 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.07□□□□□ -2.08
LMX1BO60663 AC090515.1-201ENST00000465295 476 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 AC091959.1-201ENST00000495857 238 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 RNA5SP112-201ENST00000515937 99 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 RNU6-1098P-201ENST00000516772 96 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 HSPE1P18-201ENST00000517602 280 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 MIR4446-201ENST00000578505 67 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 MIR4282-201ENST00000583613 67 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 AC008873.1-201ENST00000625051 138 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 MIR3674-201ENST00000636576 68 ntBASIC2.07□□□□□ -2.08
LMX1BO60663 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LMX1BO60663 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.07□□□□□ -2.08
LMX1BO60663 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LMX1BO60663 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.06□□□□□ -2.08
LMX1BO60663 UBE2WP1-201ENST00000362030 340 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 RNU6-486P-201ENST00000363116 107 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 Y_RNA.117-201ENST00000363294 101 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 Y_RNA.275-201ENST00000364726 110 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 RNU6-1264P-201ENST00000383891 107 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 RNU1-138P-201ENST00000384093 164 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 Y_RNA.515-201ENST00000384535 112 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 MIR548B-201ENST00000385247 97 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
LMX1BO60663 Y_RNA.597-201ENST00000410463 100 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 RN7SKP223-201ENST00000410582 62 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 AC007064.1-201ENST00000412238 351 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 RPL23AP36-201ENST00000413895 458 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 AC005042.3-201ENST00000453230 174 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 AC140059.1-201ENST00000489238 361 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 AC026436.1-201ENST00000510537 270 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.06□□□□□ -2.08
LMX1BO60663 MIR449C-201ENST00000516047 92 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 RNU4-71P-201ENST00000516258 113 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 DEFB122-202ENST00000569013 197 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 MIR3145-201ENST00000580727 82 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 SNORD11B-201ENST00000607707 90 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 AC067747.1-201ENST00000608026 250 ntBASIC2.06□□□□□ -2.08
LMX1BO60663 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.06□□□□□ -2.08
LMX1BO60663 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.06□□□□□ -2.08
LMX1BO60663 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LMX1BO60663 Y_RNA.217-201ENST00000364214 105 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 RNU1-91P-201ENST00000364746 163 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 RNY4P28-201ENST00000365281 93 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 Y_RNA.785-201ENST00000384290 109 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 SNORA53-201ENST00000391141 249 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 U6atac.2-201ENST00000408644 118 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.05□□□□□ -2.08
LMX1BO60663 AC092427.1-202ENST00000430569 476 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 PRELID3BP1-201ENST00000457142 540 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 snoU13.23-201ENST00000458863 104 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 Y_RNA.641-201ENST00000459414 105 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 AC234781.5-201ENST00000508429 271 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 SNORD116-28-201ENST00000516123 91 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 RNU6-436P-201ENST00000516171 114 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 SNORA27.4-201ENST00000516650 95 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.05□□□□□ -2.08
LMX1BO60663 AL049779.4-201ENST00000604500 156 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 AC006001.4-201ENST00000622243 395 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.05□□□□□ -2.08
LMX1BO60663 AC080128.1-201ENST00000474389 1917 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 AC010329.5-201ENST00000623497 2174 ntBASIC2.05□□□□□ -2.08
LMX1BO60663 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms