Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 MIR4753-201ENST00000585119 83 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 AC022432.1-201ENST00000595739 310 ntBASIC1.07□□□□□ -2.24
SHANK1Q9Y566 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 RNU6-1252P-201ENST00000363054 104 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 SNORD114-6-201ENST00000364393 72 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 RNU6-203P-201ENST00000384038 104 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 MIR1283-2-201ENST00000408621 87 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 RPL30P16-201ENST00000419341 429 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 CST2P1-201ENST00000425770 87 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 USP9YP28-201ENST00000435142 589 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 MTND3P10-201ENST00000450967 341 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 RNU1-131P-201ENST00000458943 161 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 MTND4P17-201ENST00000470444 350 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 AC023790.1-201ENST00000482174 347 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 RNU6-1146P-201ENST00000516282 102 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 Y_RNA.706-201ENST00000516933 99 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 MIR4287-201ENST00000579398 78 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 AC100812.1-201ENST00000607622 580 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 AC091932.3-201ENST00000624223 323 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 RNU1-76P-201ENST00000362903 159 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 MIR208B-201ENST00000401172 77 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 AC004866.1-201ENST00000411748 78 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 Z82188.1-201ENST00000436709 154 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 MTCO1P44-201ENST00000441935 243 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 RNU6-113P-201ENST00000516653 101 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 RNU6-667P-201ENST00000517186 102 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 MIR2355-201ENST00000517199 87 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.06□□□□□ -2.24
SHANK1Q9Y566 DEFB131C-201ENST00000528817 165 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 CYP3A137P-201ENST00000562436 69 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 AC004584.2-201ENST00000570407 410 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 MIR4790-201ENST00000577799 79 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 MIR4273-201ENST00000582824 84 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 AC103810.9-201ENST00000606688 112 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 AC092794.2-201ENST00000620933 563 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 snoZ196.1-201ENST00000625269 89 ntBASIC1.06□□□□□ -2.24
SHANK1Q9Y566 RNU1-23P-201ENST00000363361 144 ntBASIC1.05□□□□□ -2.24
SHANK1Q9Y566 RNA5SP457-201ENST00000363657 124 ntBASIC1.05□□□□□ -2.24
SHANK1Q9Y566 Y_RNA.450-201ENST00000384198 113 ntBASIC1.05□□□□□ -2.24
SHANK1Q9Y566 MIR518A2-201ENST00000384966 87 ntBASIC1.05□□□□□ -2.24
SHANK1Q9Y566 MIR300-201ENST00000401138 83 ntBASIC1.05□□□□□ -2.24
SHANK1Q9Y566 RNU6-1148P-201ENST00000410992 104 ntBASIC1.05□□□□□ -2.24
SHANK1Q9Y566 AC138393.2-201ENST00000414742 246 ntBASIC1.05□□□□□ -2.24
SHANK1Q9Y566 MTND5P20-201ENST00000448677 143 ntBASIC1.05□□□□□ -2.24
SHANK1Q9Y566 AL121579.1-201ENST00000555129 305 ntBASIC1.05□□□□□ -2.24
SHANK1Q9Y566 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.05□□□□□ -2.24
SHANK1Q9Y566 AC005899.2-201ENST00000584353 90 ntBASIC1.05□□□□□ -2.24
SHANK1Q9Y566 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.05□□□□□ -2.24
SHANK1Q9Y566 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.05□□□□□ -2.24
SHANK1Q9Y566 AL627230.5-201ENST00000619807 58 ntBASIC1.05□□□□□ -2.24
SHANK1Q9Y566 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.05□□□□□ -2.24
SHANK1Q9Y566 Y_RNA.86-201ENST00000363020 111 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 SNORA72.1-201ENST00000363485 129 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 Y_RNA.179-201ENST00000363844 90 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 RNY3P14-201ENST00000384309 102 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 MIR320B2-201ENST00000408479 138 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 EIF4EP2-201ENST00000422816 654 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 USP9YP30-201ENST00000430729 455 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.04□□□□□ -2.24
SHANK1Q9Y566 RNA5SP233-201ENST00000459153 113 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AC018868.1-201ENST00000491307 315 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AC018710.1-201ENST00000506509 158 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AC091874.1-201ENST00000511402 339 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 RNU6-1114P-201ENST00000516022 107 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 SNRPGP20-201ENST00000604477 205 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AL353149.1-201ENST00000610667 244 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AL355073.2-201ENST00000612106 557 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 Y_RNA.88-201ENST00000363029 99 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 Y_RNA.132-201ENST00000363421 102 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 U3.9-201ENST00000363823 204 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 RNU6-595P-201ENST00000363944 107 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 RNU1-96P-201ENST00000364163 162 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AL356776.1-201ENST00000406574 447 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
SHANK1Q9Y566 EBAG9P1-201ENST00000418955 543 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 MTCYBP10-201ENST00000424905 650 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.04□□□□□ -2.24
SHANK1Q9Y566 RPL30P10-201ENST00000488148 337 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AC034114.1-201ENST00000520293 285 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AC036111.3-201ENST00000526389 112 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AC060780.3-201ENST00000589464 80 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.04□□□□□ -2.24
SHANK1Q9Y566 AC099654.14-201ENST00000638599 341 ntBASIC1.04□□□□□ -2.24
SHANK1Q9Y566 RNA5SP62-201ENST00000363457 110 ntBASIC1.03□□□□□ -2.24
SHANK1Q9Y566 AL356379.1-201ENST00000414105 126 ntBASIC1.03□□□□□ -2.24
SHANK1Q9Y566 AC009310.1-201ENST00000414414 451 ntBASIC1.03□□□□□ -2.24
SHANK1Q9Y566 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 155.4 ms