Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.42□□□□□ -2.18
FOXA2Q9Y261 AC090617.3-201ENST00000573670 475 ntBASIC1.42□□□□□ -2.18
FOXA2Q9Y261 MIR3937-201ENST00000580135 106 ntBASIC1.42□□□□□ -2.18
FOXA2Q9Y261 RNU6-281P-201ENST00000384212 103 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 U8.13-201ENST00000390842 128 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 RPL21P1-201ENST00000399532 476 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 Y_RNA.595-201ENST00000410403 105 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 TOMM22P2-201ENST00000430735 237 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 RPL23AP50-201ENST00000434149 455 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 RNU6-295P-201ENST00000516901 104 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 AC091144.1-201ENST00000519573 138 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 FRG2DP-202ENST00000566967 323 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 AC005014.2-201ENST00000607795 599 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 AC009229.3-201ENST00000608056 282 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.41□□□□□ -2.18
FOXA2Q9Y261 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
FOXA2Q9Y261 AL121890.5-201ENST00000620848 304 ntBASIC1.41□□□□□ -2.18
FOXA2Q9Y261 RNY1P16-201ENST00000363063 111 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 Y_RNA.364-201ENST00000365532 101 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 Y_RNA.482-201ENST00000384377 111 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 RNU6-1001P-201ENST00000411265 100 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 AC004965.1-201ENST00000413033 213 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 AL161935.2-201ENST00000414627 60 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 AC005002.2-201ENST00000438228 269 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 UBE2V1P7-201ENST00000446395 340 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA2Q9Y261 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.4□□□□□ -2.19
FOXA2Q9Y261 AC046134.1-201ENST00000514454 666 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 RNU6-902P-201ENST00000517212 91 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 MTND4LP26-201ENST00000518144 282 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 AC027419.1-201ENST00000522976 328 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA2Q9Y261 MIR5701-3-201ENST00000578890 82 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 AC005899.2-201ENST00000584353 90 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 MIR5701-1-201ENST00000585138 82 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 AL929325.1-201ENST00000603096 117 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 MIR5701-2-201ENST00000615634 82 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 U6.73-201ENST00000619194 103 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 AC084768.2-201ENST00000622736 221 ntBASIC1.4□□□□□ -2.19
FOXA2Q9Y261 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.4□□□□□ -2.19
FOXA2Q9Y261 CASC19-280ENST00000642102 1351 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 MIR302D-201ENST00000362275 68 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 RNU6-767P-201ENST00000384132 107 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 RNU6-1065P-201ENST00000384513 106 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 MIR9-3-201ENST00000385084 90 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 MIR513A1-201ENST00000385138 129 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 MIR1289-2-201ENST00000408360 111 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 RN7SKP200-201ENST00000410564 320 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 AC010154.1-201ENST00000425857 269 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 UQCRBP2-201ENST00000447827 297 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 MTND3P10-201ENST00000450967 341 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.39□□□□□ -2.19
FOXA2Q9Y261 RPL7P42-201ENST00000481005 679 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 RPS29P11-201ENST00000496507 171 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 RNU6-307P-201ENST00000516743 106 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 CYCSP23-201ENST00000519781 313 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.39□□□□□ -2.19
FOXA2Q9Y261 MIR4298-201ENST00000584380 73 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 MIR6845-201ENST00000613182 61 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 U6.108-201ENST00000637764 58 ntBASIC1.39□□□□□ -2.19
FOXA2Q9Y261 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
FOXA2Q9Y261 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.39□□□□□ -2.19
FOXA2Q9Y261 WWP1P1-201ENST00000466609 2769 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 Y_RNA.88-201ENST00000363029 99 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 RNU6-879P-201ENST00000364328 108 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 MIR194-1-201ENST00000384892 85 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 SNORA26.9-201ENST00000391322 122 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 AC245047.3-201ENST00000429428 127 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 AC092423.1-201ENST00000430165 186 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 AL135790.2-201ENST00000437701 267 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 AC027119.1-201ENST00000440877 241 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 AL606517.2-201ENST00000442855 241 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 FGF7P6-202ENST00000451282 293 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 SNORD65B-201ENST00000459126 73 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 RPS27P22-201ENST00000478056 241 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.38□□□□□ -2.19
FOXA2Q9Y261 RNU7-99P-201ENST00000516271 62 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 RNU7-30P-201ENST00000516835 62 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 AC105029.1-201ENST00000520250 669 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
FOXA2Q9Y261 DEFB122-202ENST00000569013 197 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 AC015688.6-201ENST00000577737 104 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 MIR4438-201ENST00000585271 93 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 AC040896.1-201ENST00000613819 479 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.38□□□□□ -2.19
FOXA2Q9Y261 AC099654.5-201ENST00000636479 350 ntBASIC1.38□□□□□ -2.19
FOXA2Q9Y261 Y_RNA.160-201ENST00000363677 92 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 Y_RNA.339-201ENST00000365325 102 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 RNA5SP259-201ENST00000365541 109 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 Y_RNA.619-201ENST00000410951 90 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 RPS20P15-201ENST00000412792 311 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 EIF1P2-201ENST00000428233 350 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 RPS27P1-201ENST00000450552 247 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 RNU7-94P-201ENST00000459576 63 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA2Q9Y261 AC023157.2-201ENST00000540596 141 ntBASIC1.37□□□□□ -2.19
FOXA2Q9Y261 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.37□□□□□ -2.19
FOXA2Q9Y261 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms