Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU6-273P-201ENST00000516937 96 ntBASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 RNU6-1314P-201ENST00000517139 104 ntBASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 AC022217.4-201ENST00000604389 163 ntBASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 AC021506.2-201ENST00000612354 169 ntBASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 AC040896.1-201ENST00000613819 479 ntBASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 SNORA25.8-201ENST00000364831 128 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 RNU6-793P-201ENST00000384233 104 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 Y_RNA.533-201ENST00000384596 114 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 RNU6-939P-201ENST00000384634 107 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 AP1B1P2-201ENST00000416196 106 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 SNX2P2-201ENST00000424553 323 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 Y_RNA.638-201ENST00000459374 113 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 RAB11AP2-201ENST00000545905 639 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 CYP3A52P-201ENST00000563326 91 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 FRG2DP-202ENST00000566967 323 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 AC012557.2-201ENST00000605919 418 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 AL355802.3-201ENST00000607571 545 ntBASIC1.32□□□□□ -2.2
CCDC40Q4G0X9 RNU6-1123P-201ENST00000362347 106 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 Y_RNA.89-201ENST00000363031 102 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 RNU6-280P-201ENST00000364145 104 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 RNA5SP259-201ENST00000365541 109 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 RNU6-831P-201ENST00000384548 107 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 RNU6-950P-201ENST00000384651 107 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 RNU6-1031P-201ENST00000384773 107 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 Y_RNA.595-201ENST00000410403 105 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 RNU6-1148P-201ENST00000410992 104 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 RNU7-128P-201ENST00000517247 62 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 AC134698.4-201ENST00000523451 826 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 AL512310.8-201ENST00000550183 120 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 MIR4273-201ENST00000582824 84 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 AC022432.1-201ENST00000595739 310 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 7SK.7-201ENST00000603504 247 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 AC073413.2-201ENST00000604332 360 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 AL157834.3-201ENST00000615543 103 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 AC100810.6-201ENST00000638068 285 ntBASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC40Q4G0X9 RNU6-596P-201ENST00000365395 98 ntBASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 Y_RNA.450-201ENST00000384198 113 ntBASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 MIR10B-201ENST00000385011 110 ntBASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 RNU6-1186P-201ENST00000410429 97 ntBASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 AP000870.1-201ENST00000472927 406 ntBASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 RNU7-175P-201ENST00000515915 61 ntBASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 RNU6-1088P-201ENST00000516850 104 ntBASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 AL137100.2-201ENST00000555786 315 ntBASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 EIF1P4-201ENST00000572664 335 ntBASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 MIR8054-201ENST00000620877 86 ntBASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.3□□□□□ -2.2
CCDC40Q4G0X9 Y_RNA.179-201ENST00000363844 90 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 Y_RNA.405-201ENST00000383979 100 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 Y_RNA.451-201ENST00000384200 100 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 Y_RNA.524-201ENST00000384564 100 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 Y_RNA.561-201ENST00000384694 100 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 MIR618-201ENST00000385287 98 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 AC009161.1-201ENST00000417306 376 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 AL603825.1-201ENST00000438481 80 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 AC105313.1-201ENST00000509121 353 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 AC093303.1-201ENST00000514549 295 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 RNU6-720P-201ENST00000516363 108 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 SUMO2P16-201ENST00000519475 264 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 AL590705.4-201ENST00000532209 134 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 AL390123.1-201ENST00000603216 237 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 MZT1P2-201ENST00000604387 248 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 U6.73-201ENST00000619194 103 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 AL353770.2-201ENST00000620024 78 ntBASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
CCDC40Q4G0X9 RNA5SP327-201ENST00000362494 101 ntBASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 RNU6-1266P-201ENST00000362794 105 ntBASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 RNU6-623P-201ENST00000363143 105 ntBASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 RNU6-1059P-201ENST00000363752 98 ntBASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 RNU5F-3P-201ENST00000363767 117 ntBASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 RNU6-595P-201ENST00000363944 107 ntBASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 RNU4-12P-201ENST00000365233 139 ntBASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 TOMM22P2-201ENST00000430735 237 ntBASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 ZNF299P-201ENST00000406845 1804 ntBASIC1.28□□□□□ -2.2
CCDC40Q4G0X9 Y_RNA.3-201ENST00000362331 103 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.157-201ENST00000363638 102 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.338-201ENST00000365320 114 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 AL356776.1-201ENST00000406574 447 ntBASIC1.27□□□□□ -2.21
CCDC40Q4G0X9 MIR1285-1-201ENST00000408593 84 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms