Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 Y_RNA.605-201ENST00000410577 105 ntBASIC1.98□□□□□ -2.09
MSH2P43246 RN7SL429P-201ENST00000479090 223 ntBASIC1.98□□□□□ -2.09
MSH2P43246 RN7SL489P-201ENST00000486185 223 ntBASIC1.98□□□□□ -2.09
MSH2P43246 RN7SL327P-201ENST00000488659 223 ntBASIC1.98□□□□□ -2.09
MSH2P43246 RN7SKP49-201ENST00000516675 260 ntBASIC1.98□□□□□ -2.09
MSH2P43246 AC091144.1-201ENST00000519573 138 ntBASIC1.98□□□□□ -2.09
MSH2P43246 CYCSP23-201ENST00000519781 313 ntBASIC1.98□□□□□ -2.09
MSH2P43246 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.98□□□□□ -2.09
MSH2P43246 GNAI2P1-201ENST00000541815 315 ntBASIC1.98□□□□□ -2.09
MSH2P43246 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.98□□□□□ -2.09
MSH2P43246 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.98□□□□□ -2.09
MSH2P43246 RN7SL853P-201ENST00000617250 223 ntBASIC1.98□□□□□ -2.09
MSH2P43246 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.98□□□□□ -2.09
MSH2P43246 AC090574.1-201ENST00000623186 233 ntBASIC1.98□□□□□ -2.09
MSH2P43246 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.98□□□□□ -2.09
MSH2P43246 AC006026.1-201ENST00000444025 1803 ntBASIC1.98□□□□□ -2.09
MSH2P43246 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
MSH2P43246 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.98□□□□□ -2.09
MSH2P43246 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
MSH2P43246 Y_RNA.460-201ENST00000384255 102 ntBASIC1.97□□□□□ -2.09
MSH2P43246 SNORA67.3-201ENST00000384366 140 ntBASIC1.97□□□□□ -2.09
MSH2P43246 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
MSH2P43246 AC009310.1-201ENST00000414414 451 ntBASIC1.97□□□□□ -2.09
MSH2P43246 AC022254.1-201ENST00000567857 235 ntBASIC1.97□□□□□ -2.09
MSH2P43246 MIR4648-201ENST00000580107 72 ntBASIC1.97□□□□□ -2.09
MSH2P43246 AL357075.2-201ENST00000614906 189 ntBASIC1.97□□□□□ -2.09
MSH2P43246 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.97□□□□□ -2.09
MSH2P43246 AL160413.1-201ENST00000622780 310 ntBASIC1.97□□□□□ -2.09
MSH2P43246 AC022513.1-201ENST00000624512 117 ntBASIC1.97□□□□□ -2.09
MSH2P43246 snoZ196.1-201ENST00000625269 89 ntBASIC1.97□□□□□ -2.09
MSH2P43246 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.97□□□□□ -2.09
MSH2P43246 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.97□□□□□ -2.09
MSH2P43246 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
MSH2P43246 SNORD42.2-201ENST00000365570 69 ntBASIC1.96□□□□□ -2.1
MSH2P43246 Y_RNA.395-201ENST00000383945 109 ntBASIC1.96□□□□□ -2.1
MSH2P43246 RNU6-57P-201ENST00000411348 103 ntBASIC1.96□□□□□ -2.1
MSH2P43246 OOSP1P1-201ENST00000423265 274 ntBASIC1.96□□□□□ -2.1
MSH2P43246 AC018865.2-201ENST00000423631 129 ntBASIC1.96□□□□□ -2.1
MSH2P43246 AC096644.2-201ENST00000429278 159 ntBASIC1.96□□□□□ -2.1
MSH2P43246 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.96□□□□□ -2.1
MSH2P43246 CHEK2P4-201ENST00000450340 246 ntBASIC1.96□□□□□ -2.1
MSH2P43246 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.96□□□□□ -2.1
MSH2P43246 HMGB3P17-201ENST00000504195 649 ntBASIC1.96□□□□□ -2.1
MSH2P43246 HMGN1P13-201ENST00000505795 138 ntBASIC1.96□□□□□ -2.1
MSH2P43246 Y_RNA.661-201ENST00000516003 99 ntBASIC1.96□□□□□ -2.1
MSH2P43246 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.96□□□□□ -2.1
MSH2P43246 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.96□□□□□ -2.1
MSH2P43246 AC005786.1-201ENST00000588553 154 ntBASIC1.96□□□□□ -2.1
MSH2P43246 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.96□□□□□ -2.1
MSH2P43246 AC083806.3-201ENST00000614016 455 ntBASIC1.96□□□□□ -2.1
MSH2P43246 U2.1-201ENST00000618978 145 ntBASIC1.96□□□□□ -2.1
MSH2P43246 MTND4P29-201ENST00000503122 1372 ntBASIC1.96□□□□□ -2.1
MSH2P43246 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.95□□□□□ -2.1
MSH2P43246 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
MSH2P43246 RNU1-115P-201ENST00000365329 160 ntBASIC1.95□□□□□ -2.1
MSH2P43246 AC060773.1-201ENST00000421698 310 ntBASIC1.95□□□□□ -2.1
MSH2P43246 UQCRBP2-201ENST00000447827 297 ntBASIC1.95□□□□□ -2.1
MSH2P43246 PCNPP5-201ENST00000452246 481 ntBASIC1.95□□□□□ -2.1
MSH2P43246 Y_RNA.639-201ENST00000458981 102 ntBASIC1.95□□□□□ -2.1
MSH2P43246 RNU6-221P-201ENST00000459541 99 ntBASIC1.95□□□□□ -2.1
MSH2P43246 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.95□□□□□ -2.1
MSH2P43246 RPS29P21-201ENST00000496272 170 ntBASIC1.95□□□□□ -2.1
MSH2P43246 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
MSH2P43246 RNU6-911P-201ENST00000516523 104 ntBASIC1.95□□□□□ -2.1
MSH2P43246 AL442163.3-201ENST00000554110 156 ntBASIC1.95□□□□□ -2.1
MSH2P43246 AC092447.9-201ENST00000603395 144 ntBASIC1.95□□□□□ -2.1
MSH2P43246 uc_338.22-201ENST00000622722 187 ntBASIC1.95□□□□□ -2.1
MSH2P43246 MIR219B-201ENST00000637023 88 ntBASIC1.95□□□□□ -2.1
MSH2P43246 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
MSH2P43246 AC092881.1-201ENST00000638218 2733 ntBASIC1.95□□□□□ -2.1
MSH2P43246 MIR369-201ENST00000362155 70 ntBASIC1.94□□□□□ -2.1
MSH2P43246 Y_RNA.112-201ENST00000363250 102 ntBASIC1.94□□□□□ -2.1
MSH2P43246 MIR628-201ENST00000385229 95 ntBASIC1.94□□□□□ -2.1
MSH2P43246 MIR1185-2-201ENST00000408687 86 ntBASIC1.94□□□□□ -2.1
MSH2P43246 ELOCP21-201ENST00000412558 336 ntBASIC1.94□□□□□ -2.1
MSH2P43246 AL137792.2-201ENST00000443484 235 ntBASIC1.94□□□□□ -2.1
MSH2P43246 AC007677.1-201ENST00000445757 515 ntBASIC1.94□□□□□ -2.1
MSH2P43246 ATP5J2P3-201ENST00000451550 258 ntBASIC1.94□□□□□ -2.1
MSH2P43246 AC074133.1-201ENST00000515696 183 ntBASIC1.94□□□□□ -2.1
MSH2P43246 SUMO2P18-201ENST00000518873 252 ntBASIC1.94□□□□□ -2.1
MSH2P43246 SNRPGP19-201ENST00000603826 189 ntBASIC1.94□□□□□ -2.1
MSH2P43246 AC103810.8-201ENST00000607347 118 ntBASIC1.94□□□□□ -2.1
MSH2P43246 AC090971.5-201ENST00000621102 293 ntBASIC1.94□□□□□ -2.1
MSH2P43246 MIR4272-201ENST00000635924 64 ntBASIC1.94□□□□□ -2.1
MSH2P43246 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
MSH2P43246 RNY3P4-201ENST00000384428 101 ntBASIC1.93□□□□□ -2.1
MSH2P43246 SNORD12B-201ENST00000410433 91 ntBASIC1.93□□□□□ -2.1
MSH2P43246 RNA5SP100-201ENST00000410903 110 ntBASIC1.93□□□□□ -2.1
MSH2P43246 RNA5SP59-201ENST00000410922 110 ntBASIC1.93□□□□□ -2.1
MSH2P43246 RPS20P15-201ENST00000412792 311 ntBASIC1.93□□□□□ -2.1
MSH2P43246 HSPE1P21-201ENST00000438283 308 ntBASIC1.93□□□□□ -2.1
MSH2P43246 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.93□□□□□ -2.1
MSH2P43246 YWHAEP4-201ENST00000505390 198 ntBASIC1.93□□□□□ -2.1
MSH2P43246 AC011406.1-201ENST00000512440 370 ntBASIC1.93□□□□□ -2.1
MSH2P43246 RNU6-1041P-201ENST00000516254 102 ntBASIC1.93□□□□□ -2.1
MSH2P43246 RNU6-107P-201ENST00000516643 102 ntBASIC1.93□□□□□ -2.1
MSH2P43246 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.93□□□□□ -2.1
MSH2P43246 AC025647.1-201ENST00000517879 253 ntBASIC1.93□□□□□ -2.1
MSH2P43246 MIR3122-201ENST00000577243 73 ntBASIC1.93□□□□□ -2.1
MSH2P43246 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 158.2 ms