Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SNORA31.10-201ENST00000516482 106 ntBASIC1.2□□□□□ -2.22
CLDN3O15551 AL137100.2-201ENST00000555786 315 ntBASIC1.2□□□□□ -2.22
CLDN3O15551 MIR3664-201ENST00000579074 99 ntBASIC1.2□□□□□ -2.22
CLDN3O15551 7SK.7-201ENST00000603504 247 ntBASIC1.2□□□□□ -2.22
CLDN3O15551 AC022217.4-201ENST00000604389 163 ntBASIC1.2□□□□□ -2.22
CLDN3O15551 AL138726.1-201ENST00000614873 333 ntBASIC1.2□□□□□ -2.22
CLDN3O15551 U6.108-201ENST00000637764 58 ntBASIC1.2□□□□□ -2.22
CLDN3O15551 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CLDN3O15551 RNU1-22P-201ENST00000363334 158 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 U3.8-201ENST00000363675 217 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 Y_RNA.415-201ENST00000384012 112 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 Y_RNA.530-201ENST00000384587 101 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 MIR1185-2-201ENST00000408687 86 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 TOMM22P2-201ENST00000430735 237 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 PGBD4P5-201ENST00000445958 426 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 MTND1P29-201ENST00000448112 647 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 COX6CP14-201ENST00000469580 174 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 RNU6-256P-201ENST00000516747 97 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 MTND2P38-201ENST00000522536 667 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 AC092954.2-201ENST00000609103 430 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 MIR8054-201ENST00000620877 86 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 MTND4P12-201ENST00000498999 1377 ntBASIC1.19□□□□□ -2.22
CLDN3O15551 SNORD116-2-201ENST00000384274 95 ntBASIC1.18□□□□□ -2.22
CLDN3O15551 SNORD116-6-201ENST00000384711 96 ntBASIC1.18□□□□□ -2.22
CLDN3O15551 RNU6-908P-201ENST00000410160 94 ntBASIC1.18□□□□□ -2.22
CLDN3O15551 MTND1P1-201ENST00000445453 368 ntBASIC1.18□□□□□ -2.22
CLDN3O15551 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.18□□□□□ -2.22
CLDN3O15551 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.18□□□□□ -2.22
CLDN3O15551 AC027288.2-201ENST00000553028 243 ntBASIC1.18□□□□□ -2.22
CLDN3O15551 PIGPP4-201ENST00000584447 307 ntBASIC1.18□□□□□ -2.22
CLDN3O15551 AC022432.1-201ENST00000595739 310 ntBASIC1.18□□□□□ -2.22
CLDN3O15551 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.18□□□□□ -2.22
CLDN3O15551 AC068647.2-201ENST00000637380 353 ntBASIC1.18□□□□□ -2.22
CLDN3O15551 RNU6-280P-201ENST00000364145 104 ntBASIC1.17□□□□□ -2.22
CLDN3O15551 Y_RNA.559-201ENST00000384686 107 ntBASIC1.17□□□□□ -2.22
CLDN3O15551 RNU6-332P-201ENST00000391193 108 ntBASIC1.17□□□□□ -2.22
CLDN3O15551 MRPL42P3-201ENST00000401492 326 ntBASIC1.17□□□□□ -2.22
CLDN3O15551 ZNF885P-201ENST00000420174 1098 ntBASIC1.17□□□□□ -2.22
CLDN3O15551 HSPE1P13-201ENST00000451143 297 ntBASIC1.17□□□□□ -2.22
CLDN3O15551 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.17□□□□□ -2.22
CLDN3O15551 RPL30P10-201ENST00000488148 337 ntBASIC1.17□□□□□ -2.22
CLDN3O15551 UBL5P4-201ENST00000562584 236 ntBASIC1.17□□□□□ -2.22
CLDN3O15551 AC124303.1-201ENST00000605703 360 ntBASIC1.17□□□□□ -2.22
CLDN3O15551 AL021879.1-201ENST00000611756 288 ntBASIC1.17□□□□□ -2.22
CLDN3O15551 Y_RNA.38-201ENST00000362617 102 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 RNU5F-3P-201ENST00000363767 117 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 Y_RNA.256-201ENST00000364594 104 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 SNORA70.7-201ENST00000384159 133 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 RNU6-793P-201ENST00000384233 104 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 RNU6-440P-201ENST00000390882 105 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 NDUFB4P10-201ENST00000452541 359 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 AC091179.3-201ENST00000474761 144 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.16□□□□□ -2.22
CLDN3O15551 RNU6-314P-201ENST00000516574 104 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 APOOP3-201ENST00000536787 586 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 U6.73-201ENST00000619194 103 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 AC009248.2-201ENST00000619826 254 ntBASIC1.16□□□□□ -2.22
CLDN3O15551 RNU6-451P-201ENST00000362921 107 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 RNU6-137P-201ENST00000363680 108 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 RNY3P3-201ENST00000363816 102 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 MIR222-201ENST00000384992 110 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 AL034345.1-201ENST00000407768 123 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.15□□□□□ -2.23
CLDN3O15551 MTATP6P13-201ENST00000438531 667 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 RNU7-66P-201ENST00000459469 62 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 RNU7-99P-201ENST00000516271 62 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 AC027419.1-201ENST00000522976 328 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.15□□□□□ -2.23
CLDN3O15551 FRG2DP-202ENST00000566967 323 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 MIR3672-201ENST00000584290 82 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 SNORD114-21-201ENST00000606412 72 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 AC106754.2-201ENST00000623006 233 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.15□□□□□ -2.23
CLDN3O15551 SNORD3E-202ENST00000627253 216 ntBASIC1.15□□□□□ -2.23
CLDN3O15551 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.15□□□□□ -2.23
CLDN3O15551 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
CLDN3O15551 Y_RNA.179-201ENST00000363844 90 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 Y_RNA.212-201ENST00000364177 102 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 Y_RNA.414-201ENST00000384011 101 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 RNU6-17P-201ENST00000384245 107 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 RNU6-18P-201ENST00000384527 107 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 RNU6-306P-201ENST00000384617 107 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 RNU6-159P-201ENST00000391080 106 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.14□□□□□ -2.23
CLDN3O15551 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.14□□□□□ -2.23
CLDN3O15551 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.14□□□□□ -2.23
CLDN3O15551 RPL39P38-201ENST00000467018 153 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 RNU6-107P-201ENST00000516643 102 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 RNU7-128P-201ENST00000517247 62 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.14□□□□□ -2.23
CLDN3O15551 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.14□□□□□ -2.23
CLDN3O15551 AK6P2-201ENST00000549020 471 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 AC245505.1-201ENST00000556398 224 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 AC004584.2-201ENST00000570407 410 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 MIR4273-201ENST00000582824 84 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.14□□□□□ -2.23
CLDN3O15551 AL390123.1-201ENST00000603216 237 ntBASIC1.14□□□□□ -2.23
CLDN3O15551 BX284668.6-201ENST00000606899 438 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 142 ms