Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC091179.3-201ENST00000474761 144 ntBASIC2.11□□□□□ -2.07
LIMA1Q9UHB6 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.11□□□□□ -2.07
LIMA1Q9UHB6 RNU2-34P-201ENST00000516534 121 ntBASIC2.11□□□□□ -2.07
LIMA1Q9UHB6 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.11□□□□□ -2.07
LIMA1Q9UHB6 SUB1P3-201ENST00000564581 315 ntBASIC2.11□□□□□ -2.07
LIMA1Q9UHB6 AL078596.1-201ENST00000624856 447 ntBASIC2.11□□□□□ -2.07
LIMA1Q9UHB6 AC068205.3-201ENST00000636385 468 ntBASIC2.11□□□□□ -2.07
LIMA1Q9UHB6 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 RNU6-99P-201ENST00000364721 107 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 RNU6-975P-201ENST00000384296 105 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 RNU6-1011P-201ENST00000384668 107 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 AL512604.1-201ENST00000404812 257 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 MIR1302-11-201ENST00000408051 138 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 MIR548P-201ENST00000408336 84 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 MIR1302-9-201ENST00000408365 138 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 MIR1302-10-201ENST00000408734 138 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 AL135786.1-201ENST00000415892 214 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 HMGN2P19-201ENST00000425149 265 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 AC096638.1-201ENST00000444678 216 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 Y_RNA.631-201ENST00000459607 101 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 AC067942.3-201ENST00000512025 362 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 RNU6-856P-201ENST00000516959 98 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 Y_RNA.711-201ENST00000516993 102 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 AC090617.3-201ENST00000573670 475 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 MIR3171-201ENST00000584270 74 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 MIR1302-2-201ENST00000607096 138 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 MIR1244-1-201ENST00000612829 85 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 AC005296.1-201ENST00000616145 209 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 AC007742.2-201ENST00000618226 398 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 uc_338.20-201ENST00000621563 178 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 MIR1244-3-201ENST00000635744 85 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 MIR1244-2-201ENST00000636449 85 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 MIR1244-4-202ENST00000636813 85 ntBASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
LIMA1Q9UHB6 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 Y_RNA.128-201ENST00000363391 112 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 RNU6-727P-201ENST00000363592 107 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 Y_RNA.179-201ENST00000363844 90 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 Y_RNA.252-201ENST00000364556 101 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 Y_RNA.445-201ENST00000384168 102 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 RNU6-281P-201ENST00000384212 103 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 RNU6-1235P-201ENST00000384559 107 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 RNA5SP213-201ENST00000391031 106 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 RNU2-40P-201ENST00000410833 196 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 RNA5SP501-201ENST00000410990 112 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 AC005534.2-201ENST00000431047 433 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 AC016717.1-201ENST00000448918 286 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 RNU6-498P-201ENST00000459468 107 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 AC105758.1-201ENST00000506038 399 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 RNU6-264P-201ENST00000517134 104 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 AC093023.1-201ENST00000547375 507 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 MIR4287-201ENST00000579398 78 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 AC005786.1-201ENST00000588553 154 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 AC022432.1-201ENST00000595739 310 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 AC010999.1-201ENST00000611856 324 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 AL159152.1-201ENST00000635019 2587 ntBASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
LIMA1Q9UHB6 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.09□□□□□ -2.08
LIMA1Q9UHB6 AC008555.8-201ENST00000623602 2168 ntBASIC2.09□□□□□ -2.08
LIMA1Q9UHB6 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 AC092881.1-201ENST00000638218 2733 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 RNU6-490P-201ENST00000362985 107 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 Y_RNA.326-201ENST00000365176 113 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 Y_RNA.415-201ENST00000384012 112 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 Y_RNA.577-201ENST00000384794 101 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 EIF1P2-201ENST00000428233 350 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 CHEK2P4-201ENST00000450340 246 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 RNU6-976P-201ENST00000516086 111 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 RNU6-948P-201ENST00000516374 107 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 SUMO2P18-201ENST00000518873 252 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 AP003072.1-201ENST00000531740 145 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 AC013412.1-201ENST00000610687 192 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 AC083806.3-201ENST00000614016 455 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 AL590808.1-201ENST00000618696 141 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 AC022513.1-201ENST00000624512 117 ntBASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.08□□□□□ -2.08
LIMA1Q9UHB6 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 Y_RNA.148-201ENST00000363557 117 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 SNORD87-201ENST00000364849 89 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 Y_RNA.358-201ENST00000365491 99 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 Y_RNA.557-201ENST00000384680 107 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 SNORA48.1-201ENST00000390879 135 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 RNA5SP425-201ENST00000410336 112 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 RNU2-20P-201ENST00000410425 191 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 AL158823.1-201ENST00000418441 478 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 Z98742.3-201ENST00000418637 326 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 AL353689.1-201ENST00000438895 199 ntBASIC2.07□□□□□ -2.08
LIMA1Q9UHB6 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 134.5 ms