Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.26□□□□□ -2.21
CDX2Q99626 AC078795.3-201ENST00000602913 472 ntBASIC1.26□□□□□ -2.21
CDX2Q99626 CYP2C61P-201ENST00000604072 290 ntBASIC1.26□□□□□ -2.21
CDX2Q99626 AC064836.2-201ENST00000609491 462 ntBASIC1.26□□□□□ -2.21
CDX2Q99626 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CDX2Q99626 AL590240.4-201ENST00000616908 390 ntBASIC1.26□□□□□ -2.21
CDX2Q99626 LINC02555-201ENST00000563933 1951 ntBASIC1.26□□□□□ -2.21
CDX2Q99626 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
CDX2Q99626 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
CDX2Q99626 MTND4P12-201ENST00000498999 1377 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 Y_RNA.356-201ENST00000365475 113 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 RNU6-26P-201ENST00000383985 107 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 RNU6-767P-201ENST00000384132 107 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 Y_RNA.573-201ENST00000384763 105 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
CDX2Q99626 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.25□□□□□ -2.21
CDX2Q99626 AL590556.1-201ENST00000423231 483 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 MTCO3P46-201ENST00000425787 232 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.25□□□□□ -2.21
CDX2Q99626 AC098614.3-201ENST00000438957 440 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 MTCO3P18-201ENST00000440206 761 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 RNA5SP57-201ENST00000459463 123 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 RNA5SP121-201ENST00000516537 101 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 RNU6-1332P-201ENST00000516666 104 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 RNA5SP330-201ENST00000517096 96 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 AC104576.1-201ENST00000524225 88 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.25□□□□□ -2.21
CDX2Q99626 UBE2V2P2-201ENST00000587677 504 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 AL022345.1-201ENST00000607292 135 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 PCGEM1.1-201ENST00000613431 131 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 AC025253.1-201ENST00000613623 543 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 AC084781.2-201ENST00000615568 161 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.25□□□□□ -2.21
CDX2Q99626 AC104985.2-201ENST00000620598 500 ntBASIC1.25□□□□□ -2.21
CDX2Q99626 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.24□□□□□ -2.21
CDX2Q99626 MTND4P29-201ENST00000503122 1372 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 RNA5SP257-201ENST00000363023 116 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 RNU4-73P-201ENST00000363164 141 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 RNU6-23P-201ENST00000363283 107 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 Y_RNA.142-201ENST00000363491 102 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 RNU6-1059P-201ENST00000363752 98 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 Y_RNA.339-201ENST00000365325 102 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 RNU6-306P-201ENST00000384617 107 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
CDX2Q99626 SNORA12.2-201ENST00000391040 156 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 AC123900.1-201ENST00000420390 96 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 AL357134.1-201ENST00000445848 426 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 MTND1P11-201ENST00000456661 876 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.24□□□□□ -2.21
CDX2Q99626 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.24□□□□□ -2.21
CDX2Q99626 RNU6-189P-201ENST00000516120 101 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 Y_RNA.682-201ENST00000516457 100 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 RNU6-1069P-201ENST00000516612 133 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 AC105029.1-201ENST00000520250 669 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.24□□□□□ -2.21
CDX2Q99626 AC025423.5-201ENST00000550230 219 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 MIR4795-201ENST00000584182 89 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 POLR3GP2-201ENST00000588366 668 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 AC005786.1-201ENST00000588553 154 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 Z98751.3-201ENST00000604447 521 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 AL132765.2-201ENST00000610812 351 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 AC007742.2-201ENST00000618226 398 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 AC103705.1-201ENST00000619013 241 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 AL109933.3-201ENST00000619095 188 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 MIR924-201ENST00000638017 53 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 AL161722.3-201ENST00000605789 2983 ntBASIC1.24□□□□□ -2.21
CDX2Q99626 RNU1-76P-201ENST00000362903 159 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 Y_RNA.212-201ENST00000364177 102 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 RNU6-338P-201ENST00000383888 105 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 Y_RNA.414-201ENST00000384011 101 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 MIR450B-201ENST00000401182 78 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 MIR548F5-201ENST00000408421 86 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 MTND3P8-201ENST00000412909 339 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.23□□□□□ -2.21
CDX2Q99626 AL031274.1-201ENST00000450334 232 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.23□□□□□ -2.21
CDX2Q99626 RNU7-187P-201ENST00000458985 68 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 AC010409.1-201ENST00000487382 476 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.23□□□□□ -2.21
CDX2Q99626 Y_RNA.654-201ENST00000497848 106 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 AC046134.1-201ENST00000514454 666 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 SNORA14.1-201ENST00000516113 141 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 RNU6-864P-201ENST00000516256 108 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 RNU6-256P-201ENST00000516747 97 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
CDX2Q99626 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.23□□□□□ -2.21
CDX2Q99626 AL133255.1-201ENST00000606374 441 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 AL357078.3-201ENST00000607528 618 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 AL138726.1-201ENST00000614873 333 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 AL359697.1-201ENST00000624879 587 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 MTND4LP32-201ENST00000636111 270 ntBASIC1.23□□□□□ -2.21
CDX2Q99626 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.23□□□□□ -2.21
CDX2Q99626 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.22□□□□□ -2.21
CDX2Q99626 Y_RNA.67-201ENST00000362870 100 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 RNA5SP62-201ENST00000363457 110 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 Y_RNA.151-201ENST00000363566 112 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 Y_RNA.157-201ENST00000363638 102 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 Y_RNA.813-201ENST00000364639 102 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 RNU6-378P-201ENST00000384324 107 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms