Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.31□□□□□ -2.2
VPS35Q96QK1 RNU6-873P-201ENST00000363833 107 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 MIR758-201ENST00000390227 88 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 RNA5SP467-201ENST00000391274 118 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
VPS35Q96QK1 RNU6-373P-201ENST00000411247 98 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.31□□□□□ -2.2
VPS35Q96QK1 AL445305.1-201ENST00000432577 575 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 AL135790.2-201ENST00000437701 267 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 RPL30P10-201ENST00000488148 337 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 AC099513.1-201ENST00000490423 301 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 HMGN1P12-201ENST00000499125 195 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 RNA5SP454-201ENST00000517231 127 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.31□□□□□ -2.2
VPS35Q96QK1 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.31□□□□□ -2.2
VPS35Q96QK1 MIR3942-201ENST00000585264 109 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 snoU13.31-201ENST00000607291 104 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 AC009033.1-201ENST00000624279 431 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.31□□□□□ -2.2
VPS35Q96QK1 MTND5P35-201ENST00000557537 1720 ntBASIC1.31□□□□□ -2.2
VPS35Q96QK1 SNORD87-201ENST00000364849 89 ntBASIC1.3□□□□□ -2.2
VPS35Q96QK1 RNU6-1240P-201ENST00000365155 104 ntBASIC1.3□□□□□ -2.2
VPS35Q96QK1 SNORD116-11-201ENST00000383882 92 ntBASIC1.3□□□□□ -2.2
VPS35Q96QK1 RNU6-306P-201ENST00000384617 107 ntBASIC1.3□□□□□ -2.2
VPS35Q96QK1 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.3□□□□□ -2.2
VPS35Q96QK1 MTATP6P13-201ENST00000438531 667 ntBASIC1.3□□□□□ -2.2
VPS35Q96QK1 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.3□□□□□ -2.2
VPS35Q96QK1 AL163195.1-201ENST00000496941 348 ntBASIC1.3□□□□□ -2.2
VPS35Q96QK1 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.3□□□□□ -2.2
VPS35Q96QK1 AP003033.1-201ENST00000527244 415 ntBASIC1.3□□□□□ -2.2
VPS35Q96QK1 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.3□□□□□ -2.2
VPS35Q96QK1 MIR4742-201ENST00000581069 85 ntBASIC1.3□□□□□ -2.2
VPS35Q96QK1 MTND4P12-201ENST00000498999 1377 ntBASIC1.3□□□□□ -2.2
VPS35Q96QK1 Y_RNA.9-201ENST00000362354 101 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 RNU6-137P-201ENST00000363680 108 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 SNORD26-201ENST00000384147 75 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 RNU6-541P-201ENST00000384709 110 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 RNA5SP109-201ENST00000391010 116 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 SNORA40.6-201ENST00000391153 128 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.29□□□□□ -2.2
VPS35Q96QK1 AC004965.1-201ENST00000413033 213 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 RPL30P13-201ENST00000418873 348 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS35Q96QK1 RPL31P58-201ENST00000469001 379 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 RPS26P45-201ENST00000471748 340 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 AC004223.1-201ENST00000479840 271 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 RNU6-273P-201ENST00000516937 96 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS35Q96QK1 AC012557.2-201ENST00000605919 418 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 AL078604.3-201ENST00000615580 211 ntBASIC1.29□□□□□ -2.2
VPS35Q96QK1 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.28□□□□□ -2.2
VPS35Q96QK1 RNU6-727P-201ENST00000363592 107 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 RNY4P14-201ENST00000363656 96 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 U3.8-201ENST00000363675 217 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 Y_RNA.415-201ENST00000384012 112 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 RNU6-17P-201ENST00000384245 107 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 RNU6-18P-201ENST00000384527 107 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 RPL21P1-201ENST00000399532 476 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 RPL30P16-201ENST00000419341 429 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 EIF1P1-201ENST00000421436 341 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.28□□□□□ -2.2
VPS35Q96QK1 AC091179.3-201ENST00000474761 144 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 RNU6-1314P-201ENST00000517139 104 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 AL442163.3-201ENST00000554110 156 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 UBL5P4-201ENST00000562584 236 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 AC005668.1-201ENST00000571142 476 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.28□□□□□ -2.2
VPS35Q96QK1 AL359075.3-201ENST00000613288 217 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 AC009248.2-201ENST00000619826 254 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 AL353770.2-201ENST00000620024 78 ntBASIC1.28□□□□□ -2.2
VPS35Q96QK1 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
VPS35Q96QK1 RNU6-1065P-201ENST00000384513 106 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 Y_RNA.554-201ENST00000384672 102 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 MIR513A1-201ENST00000385138 129 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 RNU6-159P-201ENST00000391080 106 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 AC243428.1-201ENST00000421099 264 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 AL606517.2-201ENST00000442855 241 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 RPS27P1-201ENST00000450552 247 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 NDUFB4P10-201ENST00000452541 359 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 AC103851.1-201ENST00000506833 274 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 AC105313.1-201ENST00000509121 353 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 RNU6-864P-201ENST00000516256 108 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 RNU1-142P-201ENST00000516682 145 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.27□□□□□ -2.21
VPS35Q96QK1 AK6P2-201ENST00000549020 471 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 AC068338.1-201ENST00000565567 176 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 TPRKBP2-201ENST00000565969 475 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.27□□□□□ -2.21
VPS35Q96QK1 MIR4498-201ENST00000577599 66 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 MIR5696-201ENST00000578474 85 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 AL929325.1-201ENST00000603096 117 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 7SK.7-201ENST00000603504 247 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 AC040896.1-201ENST00000613819 479 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 U6.108-201ENST00000637764 58 ntBASIC1.27□□□□□ -2.21
VPS35Q96QK1 Y_RNA.89-201ENST00000363031 102 ntBASIC1.26□□□□□ -2.21
VPS35Q96QK1 RNU6-280P-201ENST00000364145 104 ntBASIC1.26□□□□□ -2.21
VPS35Q96QK1 Y_RNA.450-201ENST00000384198 113 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 189.4 ms