Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SNRPGP20-201ENST00000604477 205 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 AL355802.3-201ENST00000607571 545 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 AC005014.2-201ENST00000607795 599 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 MIR6128-201ENST00000615528 109 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 RNU6-245P-201ENST00000384020 107 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 RNA5SP109-201ENST00000391010 116 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 MIR1277-201ENST00000408536 78 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 RPS27P16-201ENST00000425758 201 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 JTBP1-201ENST00000441314 247 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 RPL31P58-201ENST00000469001 379 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 ACA59.1-201ENST00000515966 143 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 SNORA31.10-201ENST00000516482 106 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 MIR5701-3-201ENST00000578890 82 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 MIR3945-201ENST00000581853 98 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 MIR5701-1-201ENST00000585138 82 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 MIR5701-2-201ENST00000615634 82 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 AC005858.4-201ENST00000623191 700 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 snoZ196.1-201ENST00000625269 89 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 AC068137.4-201ENST00000638485 296 ntBASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC54Q8NEL0 ZNF72P-201ENST00000425869 1908 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.6-201ENST00000362350 114 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 RNU4-13P-201ENST00000364019 141 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 SNORD1A-201ENST00000364968 72 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 RNU6-939P-201ENST00000384634 107 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 RNU6-331P-201ENST00000384724 107 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 MIR153-2-201ENST00000385225 87 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 RNU6-360P-201ENST00000390944 104 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 MIR548K-201ENST00000408406 116 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 MTND3P23-201ENST00000431980 347 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 AC015922.2-201ENST00000435593 184 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 U8.22-201ENST00000459141 133 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 AL163195.1-201ENST00000496941 348 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.670-201ENST00000516255 105 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 RNA5SP54-201ENST00000516951 92 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 AC091144.1-201ENST00000519573 138 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 AL442163.3-201ENST00000554110 156 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 AC015688.6-201ENST00000577737 104 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 AC125232.2-201ENST00000592457 143 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 AC022217.4-201ENST00000604389 163 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 AC018462.2-201ENST00000605375 395 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 AL357075.2-201ENST00000614906 189 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 AL078596.1-201ENST00000624856 447 ntBASIC1.17□□□□□ -2.22
CCDC54Q8NEL0 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.184-201ENST00000363884 108 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 RNU6-281P-201ENST00000384212 103 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 MIR1185-2-201ENST00000408687 86 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 snoU13.26-201ENST00000459452 105 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 RPL23AP94-201ENST00000512518 302 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 AF235103.2-201ENST00000525753 346 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 AP000889.1-201ENST00000530968 660 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 AC015720.1-201ENST00000565251 277 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 MIR4790-201ENST00000577799 79 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 AC068790.6-201ENST00000602558 258 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 SNORD11B-201ENST00000607707 90 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 AC139792.2-201ENST00000624218 587 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 ZNF299P-201ENST00000406845 1804 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 AC100821.1-201ENST00000523153 2479 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 ZNF209P-201ENST00000593450 2304 ntBASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.404-201ENST00000383978 102 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 MIR548F5-201ENST00000408421 86 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 RNU4-14P-201ENST00000410858 122 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 CYCSP49-201ENST00000420810 319 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 FGF7P6-202ENST00000451282 293 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 SNORD13-201ENST00000459299 104 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 RPS26P55-201ENST00000471178 356 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 RNA5SP445-201ENST00000515889 115 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 RNU6-358P-201ENST00000516564 75 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 AC060780.3-201ENST00000589464 80 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 AL390123.1-201ENST00000603216 237 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 AL050343.2-201ENST00000607338 280 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 MIR7843-201ENST00000622274 79 ntBASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
CCDC54Q8NEL0 Y_RNA.106-201ENST00000363189 100 ntBASIC1.14□□□□□ -2.23
CCDC54Q8NEL0 RNU6-137P-201ENST00000363680 108 ntBASIC1.14□□□□□ -2.23
CCDC54Q8NEL0 Y_RNA.573-201ENST00000384763 105 ntBASIC1.14□□□□□ -2.23
CCDC54Q8NEL0 RPL21P1-201ENST00000399532 476 ntBASIC1.14□□□□□ -2.23
CCDC54Q8NEL0 MIR1267-201ENST00000408723 78 ntBASIC1.14□□□□□ -2.23
CCDC54Q8NEL0 Y_RNA.594-201ENST00000410373 140 ntBASIC1.14□□□□□ -2.23
CCDC54Q8NEL0 AC010154.1-201ENST00000425857 269 ntBASIC1.14□□□□□ -2.23
CCDC54Q8NEL0 MTND4LP16-201ENST00000440828 295 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms