Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR32-201ENST00000384965 70 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 RNA5SP109-201ENST00000391010 116 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 RPL31P58-201ENST00000469001 379 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 AC103851.1-201ENST00000506833 274 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 RNU6-1198P-201ENST00000516904 67 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 AL442163.3-201ENST00000554110 156 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 ZNF519P2-201ENST00000557032 169 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 CYP3A52P-201ENST00000563326 91 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 POLR3GP2-201ENST00000588366 668 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 AC010525.2-201ENST00000590920 195 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 AC245008.1-201ENST00000608123 476 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 DISC2.1-201ENST00000612827 205 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 AC006504.8-201ENST00000621046 635 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 AL133216.2-202ENST00000634512 349 ntBASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.35□□□□□ -2.19
HDDC3Q8N4P3 RNU6-1123P-201ENST00000362347 106 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 RNU6-1252P-201ENST00000363054 104 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 Y_RNA.151-201ENST00000363566 112 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 Y_RNA.540-201ENST00000384638 111 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 MTND4LP16-201ENST00000440828 295 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 FO393415.2-201ENST00000480085 343 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 MTCYBP18-201ENST00000501056 747 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 AC025647.1-201ENST00000517879 253 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 MTND1P5-201ENST00000517906 940 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 RAB11AP2-201ENST00000545905 639 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 AL359075.3-201ENST00000613288 217 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 AC099654.12-201ENST00000639868 649 ntBASIC1.34□□□□□ -2.19
HDDC3Q8N4P3 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
HDDC3Q8N4P3 SNORD50.1-201ENST00000362987 71 ntBASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 RNU1-22P-201ENST00000363334 158 ntBASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 Y_RNA.372-201ENST00000365599 102 ntBASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 SNORA67.2-201ENST00000384300 149 ntBASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 RNU6-221P-201ENST00000459541 99 ntBASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 TRBVA-201ENST00000498804 316 ntBASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 Y_RNA.704-201ENST00000516851 102 ntBASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 AP003033.1-201ENST00000527244 415 ntBASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 AL929325.1-201ENST00000603096 117 ntBASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 MIR8065-201ENST00000620577 100 ntBASIC1.33□□□□□ -2.2
HDDC3Q8N4P3 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 Y_RNA.51-201ENST00000362725 102 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 SNORD116-1-201ENST00000384335 95 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 RNU6-541P-201ENST00000384709 110 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 AC016909.1-201ENST00000415916 166 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 DAP3P1-201ENST00000441522 278 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 COX6CP14-201ENST00000469580 174 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 MTCO2P30-201ENST00000503662 364 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 ACA59.1-201ENST00000515966 143 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 Y_RNA.665-201ENST00000516177 98 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 SNORA25.14-201ENST00000516481 132 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 RNA5SP454-201ENST00000517231 127 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 AL512310.8-201ENST00000550183 120 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 AC022709.1-201ENST00000615967 87 ntBASIC1.32□□□□□ -2.2
HDDC3Q8N4P3 MIR96-201ENST00000362288 78 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 RNU1-62P-201ENST00000362599 164 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 RNU6-1266P-201ENST00000362794 105 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 SNORD114-26-201ENST00000363543 72 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 Y_RNA.319-201ENST00000365138 92 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 MIR150-201ENST00000385048 84 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 MIR153-2-201ENST00000385225 87 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 Y_RNA.615-201ENST00000410769 117 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 AC079354.2-201ENST00000453523 154 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 AC004223.1-201ENST00000479840 271 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 RN7SKP88-201ENST00000516847 250 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 NBR2-204ENST00000587322 63 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 7SK.8-201ENST00000612110 250 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 7SK.11-201ENST00000615477 250 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 MIR7974-201ENST00000615835 79 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 7SK.13-201ENST00000622040 250 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 AC009033.1-201ENST00000624279 431 ntBASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.31□□□□□ -2.2
HDDC3Q8N4P3 SNORD115-8-201ENST00000363856 82 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 SNORD115-32-201ENST00000364079 82 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 SNORD115-38-201ENST00000365037 82 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 RNU6-483P-201ENST00000384088 108 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 RNU6-939P-201ENST00000384634 107 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 RNU6-95P-201ENST00000384697 107 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 RNU6-780P-201ENST00000391030 104 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 SNORA40.6-201ENST00000391153 128 ntBASIC1.3□□□□□ -2.2
HDDC3Q8N4P3 RNU6-1186P-201ENST00000410429 97 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms