Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNORD116.3-201ENST00000517176 78 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 SUB1P3-201ENST00000564581 315 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 AC090617.3-201ENST00000573670 475 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 MIR4753-201ENST00000585119 83 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 AC008749.1-201ENST00000597650 306 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 AC006157.1-201ENST00000611750 366 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 AL359314.1-201ENST00000616913 261 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 AC087588.2-201ENST00000617667 426 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 AC130454.1-201ENST00000622948 401 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.80-201ENST00000362996 102 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 RNU6-280P-201ENST00000364145 104 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.431-201ENST00000384086 102 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 SNORD14D-201ENST00000384390 87 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.485-201ENST00000384395 102 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 MIR628-201ENST00000385229 95 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 SNORA26.9-201ENST00000391322 122 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 RPL23AP3-201ENST00000453844 468 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 RNU7-152P-201ENST00000458982 64 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 AC091179.3-201ENST00000474761 144 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 AC234781.5-201ENST00000508429 271 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 RNA5SP480-201ENST00000516840 109 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 MIR5007-201ENST00000583098 95 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 AC092447.9-201ENST00000603395 144 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 AL080274.1-201ENST00000605565 220 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 AC103810.6-201ENST00000606708 136 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 AC010999.1-201ENST00000611856 324 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 AL590240.4-201ENST00000616908 390 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 AL160413.1-201ENST00000622780 310 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 AC092881.1-201ENST00000638218 2733 ntBASIC1.89□□□□□ -2.11
PDLIM3Q53GG5 RNU6-1115P-201ENST00000362490 106 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 RNA5SP276-201ENST00000362580 94 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 SNORD115-8-201ENST00000363856 82 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 SNORD31B-201ENST00000364977 69 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 SNORD115-38-201ENST00000365037 82 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.445-201ENST00000384168 102 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 RNU6-708P-201ENST00000384217 107 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 RNU6-793P-201ENST00000384233 104 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 MIR597-201ENST00000384968 97 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 SRIP3-201ENST00000413200 219 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 AC096920.1-201ENST00000423991 241 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 AC108667.1-201ENST00000428618 249 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 AC079804.2-201ENST00000490376 200 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 RNA5SP281-201ENST00000516504 135 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 RNU6-1153P-201ENST00000516760 105 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 RNU7-4P-201ENST00000516961 62 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 AC144568.1-201ENST00000520139 137 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 AC125232.2-201ENST00000592457 143 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 AC007485.1-201ENST00000616755 206 ntBASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.88□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.5-201ENST00000362334 102 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.138-201ENST00000363462 102 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.197-201ENST00000364004 102 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.224-201ENST00000364308 111 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 SNORD114-6-201ENST00000364393 72 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 RNU6-281P-201ENST00000384212 103 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.496-201ENST00000384444 101 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.540-201ENST00000384638 111 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 MIR518A2-201ENST00000384966 87 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 MIR676-201ENST00000390702 67 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 RNU11-3P-201ENST00000391111 133 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 MIR1283-1-201ENST00000408494 87 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.592-201ENST00000410274 109 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 RNA5SP450-201ENST00000411206 102 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 AL158823.1-201ENST00000418441 478 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 MTCO2P12-201ENST00000427426 682 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 EIF1P2-201ENST00000428233 350 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 AL160004.2-201ENST00000432935 350 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 AC099799.1-201ENST00000439809 192 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 AC007677.1-201ENST00000445757 515 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 RPL23AP6-201ENST00000446637 472 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 CHEK2P4-201ENST00000450340 246 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 AC104435.1-201ENST00000483483 166 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 AC090255.1-201ENST00000495779 349 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 MTND5P35-201ENST00000557537 1720 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 AC006600.1-201ENST00000572529 153 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 MIR4299-201ENST00000577899 72 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 SNORD11B-201ENST00000607707 90 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 AL078596.1-201ENST00000624856 447 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 ZNF720P1-201ENST00000562403 1939 ntBASIC1.87□□□□□ -2.11
PDLIM3Q53GG5 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 CENPCP1-201ENST00000533085 2578 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.31-201ENST00000362574 102 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 RNU6-23P-201ENST00000363283 107 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 RNU6-245P-201ENST00000384020 107 ntBASIC1.86□□□□□ -2.11
PDLIM3Q53GG5 RNU1-139P-201ENST00000391307 165 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 162.9 ms