Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AL078604.3-201ENST00000615580 211 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 AC015540.1-201ENST00000615828 501 ntBASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
CCDC40Q4G0X9 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 SNORD87-201ENST00000364849 89 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 RNU6-1240P-201ENST00000365155 104 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 SNORD116-11-201ENST00000383882 92 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 MIR181A1-201ENST00000385026 110 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 RNA5SP109-201ENST00000391010 116 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 RNA5SP323-201ENST00000391094 133 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 AC016907.1-201ENST00000419483 435 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 MTATP6P26-201ENST00000445926 662 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 RNU7-34P-201ENST00000459394 64 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 RPL30P10-201ENST00000488148 337 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 AL442163.3-201ENST00000554110 156 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 MIR4421-201ENST00000578133 69 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 MIR3942-201ENST00000585264 109 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 AC080013.6-201ENST00000606185 215 ntBASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.38□□□□□ -2.19
CCDC40Q4G0X9 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 MTND4P12-201ENST00000498999 1377 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 MIR378A-201ENST00000362177 66 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 RNU6-873P-201ENST00000363833 107 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 Y_RNA.402-201ENST00000383972 102 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 Y_RNA.436-201ENST00000384097 102 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 SNORA40.6-201ENST00000391153 128 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 RPL21P1-201ENST00000399532 476 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 AL606517.2-201ENST00000442855 241 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 RPS29P29-201ENST00000456396 171 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 RN7SKP179-201ENST00000516126 217 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 RNA5SP454-201ENST00000517231 127 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 AC090821.2-201ENST00000523552 176 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 AK6P2-201ENST00000549020 471 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 AC009033.1-201ENST00000624279 431 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 AC090617.10-201ENST00000624308 134 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 U6.108-201ENST00000637764 58 ntBASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.37□□□□□ -2.19
CCDC40Q4G0X9 RNU6-306P-201ENST00000384617 107 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 RNU6-373P-201ENST00000411247 98 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 BTF3P4-201ENST00000418852 495 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 EIF1P1-201ENST00000421436 341 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 RPS27P1-201ENST00000450552 247 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 RNU7-95P-201ENST00000459222 64 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 RPS26P45-201ENST00000471748 340 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 RPL30P7-201ENST00000479312 323 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 AC103851.1-201ENST00000506833 274 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 AC019288.1-201ENST00000557918 224 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 MIR5696-201ENST00000578474 85 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 MIR3660-201ENST00000584845 100 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 AC009248.2-201ENST00000619826 254 ntBASIC1.36□□□□□ -2.19
CCDC40Q4G0X9 RNU6-727P-201ENST00000363592 107 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 RNU6-137P-201ENST00000363680 108 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 Y_RNA.415-201ENST00000384012 112 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 RNU6-17P-201ENST00000384245 107 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 RNU6-18P-201ENST00000384527 107 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 Y_RNA.554-201ENST00000384672 102 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 RNU6-541P-201ENST00000384709 110 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 MIR1185-2-201ENST00000408687 86 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 RPL30P16-201ENST00000419341 429 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 MTATP6P13-201ENST00000438531 667 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 AC009474.2-201ENST00000451383 136 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 RNU1-142P-201ENST00000516682 145 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 UBL5P4-201ENST00000562584 236 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 TPRKBP2-201ENST00000565969 475 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 AL929325.1-201ENST00000603096 117 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 AL050343.2-201ENST00000607338 280 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 AL365434.2-201ENST00000607979 234 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 AL359075.3-201ENST00000613288 217 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
CCDC40Q4G0X9 RNY4P14-201ENST00000363656 96 ntBASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 U3.8-201ENST00000363675 217 ntBASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 RNU6-1065P-201ENST00000384513 106 ntBASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 MIR513A1-201ENST00000385138 129 ntBASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 RNU6-159P-201ENST00000391080 106 ntBASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 AC005002.2-201ENST00000438228 269 ntBASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 NDUFB4P10-201ENST00000452541 359 ntBASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 RPL31P58-201ENST00000469001 379 ntBASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 AC091179.3-201ENST00000474761 144 ntBASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.34□□□□□ -2.19
CCDC40Q4G0X9 Y_RNA.9-201ENST00000362354 101 ntBASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 SNORA7.1-201ENST00000363750 139 ntBASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 FGF7P8-201ENST00000402994 292 ntBASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 AC243428.1-201ENST00000421099 264 ntBASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 AC010154.1-201ENST00000425857 269 ntBASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 RNU6-864P-201ENST00000516256 108 ntBASIC1.33□□□□□ -2.2
CCDC40Q4G0X9 SNORA31.10-201ENST00000516482 106 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms