Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 SNORA70.12-201ENST00000516084 153 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 RNU1-86P-201ENST00000516108 154 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 RN7SKP164-201ENST00000516138 266 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 RNU1-107P-201ENST00000516617 154 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 AC107934.1-201ENST00000522215 217 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 DEFB131E-202ENST00000602581 683 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 AL139022.2-201ENST00000606934 443 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 MIR8076-201ENST00000611401 83 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 RN7SL660P-201ENST00000614852 299 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 FRG1KP-201ENST00000623592 341 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 FER-210ENST00000628534 558 ntTSL 5 BASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 AC092104.1-201ENST00000497346 1441 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 Y_RNA.475-201ENST00000384345 101 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 SNORA2B-201ENST00000384583 137 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 MIR145-201ENST00000384967 88 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 RN7SKP266-201ENST00000410232 287 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 MTCO1P17-201ENST00000411522 491 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 AL139396.1-201ENST00000421137 167 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 AC114811.1-201ENST00000507207 168 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 ZNF321P-202ENST00000550843 495 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 MIR548AO-201ENST00000579992 96 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 AC018462.2-201ENST00000605375 395 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 AC078880.5-201ENST00000617845 421 ntBASIC-0.17□□□□□ -2.44
CHD9Q3L8U1 MIR1-1-201ENST00000362147 71 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 RNU6-562P-201ENST00000362731 107 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 RNU6-511P-201ENST00000363496 107 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 RNA5SP275-201ENST00000363936 118 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 SNORA8.2-201ENST00000384372 139 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 RNU6-57P-201ENST00000411348 103 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 AC092809.3-201ENST00000415453 231 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 HSFY7P-201ENST00000432672 318 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 HSFY8P-201ENST00000437934 318 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 RNU2-10P-201ENST00000516375 211 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 MIR2115-201ENST00000516657 100 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 AC013828.2-201ENST00000532487 235 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 MIR4771-2-201ENST00000577758 74 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 MIR4771-1-201ENST00000582617 74 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 AC004223.2-201ENST00000590309 544 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 AC064807.4-201ENST00000607201 407 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 AC008250.2-201ENST00000615261 205 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 RMST_7.1-201ENST00000621935 268 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 RNU6-25P-201ENST00000383873 107 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 RNU6-1297P-201ENST00000384415 104 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 RNU6-29P-201ENST00000384637 107 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 MTCO2P23-201ENST00000425216 680 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 AC093850.1-201ENST00000454121 251 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 AC091135.1-201ENST00000585943 307 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 VN1R87P-201ENST00000596706 487 ntBASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC-0.18□□□□□ -2.44
CHD9Q3L8U1 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 RNU6-527P-201ENST00000363425 104 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 ELOCP17-201ENST00000414751 326 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 MTND4P15-201ENST00000437913 1033 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 AC119751.4-201ENST00000507498 357 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 RNA5SP454-201ENST00000517231 127 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 AK6P2-201ENST00000549020 471 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 MTND1P15-201ENST00000579262 949 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 MIR3192-201ENST00000584920 77 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 MIR4753-201ENST00000585119 83 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 AL356596.1-201ENST00000624230 379 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 AC027279.3-201ENST00000625055 122 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 MIR1295B-201ENST00000636144 60 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 RNU6-552P-201ENST00000362869 119 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 RNU5B-1-201ENST00000363286 116 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 Y_RNA.480-201ENST00000384364 102 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 MIR892B-201ENST00000401279 77 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 AC010975.2-201ENST00000427781 588 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 TIMM9P3-201ENST00000428659 274 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 SEPT7P4-201ENST00000437076 306 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 SCARNA18-201ENST00000459004 134 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 RNU6-1110P-201ENST00000516462 101 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 SNORA43.2-201ENST00000516652 128 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 RNU6-1261P-201ENST00000517194 104 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 AC027288.2-201ENST00000553028 243 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 FTX_2.1-201ENST00000618816 94 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-0.19□□□□□ -2.44
CHD9Q3L8U1 RNU6-756P-201ENST00000383997 107 ntBASIC-0.2□□□□□ -2.44
CHD9Q3L8U1 RNU6-1106P-201ENST00000390845 107 ntBASIC-0.2□□□□□ -2.44
CHD9Q3L8U1 RNU6-817P-201ENST00000391083 104 ntBASIC-0.2□□□□□ -2.44
CHD9Q3L8U1 TRIM60P10Y-201ENST00000425589 751 ntBASIC-0.2□□□□□ -2.44
CHD9Q3L8U1 AC013470.1-201ENST00000453438 462 ntBASIC-0.2□□□□□ -2.44
CHD9Q3L8U1 SNORA31.10-201ENST00000516482 106 ntBASIC-0.2□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 170.8 ms