Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC093027.1-201ENST00000546698 429 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.68□□□□□ -2.14
TNFRSF4P43489 SNORD53B-201ENST00000577887 78 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 AL512598.1-201ENST00000610158 273 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.68□□□□□ -2.14
TNFRSF4P43489 AP000553.5-201ENST00000641933 54 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.68□□□□□ -2.14
TNFRSF4P43489 RNY1P16-201ENST00000363063 111 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 Y_RNA.319-201ENST00000365138 92 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 Y_RNA.405-201ENST00000383979 100 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 Y_RNA.451-201ENST00000384200 100 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 Y_RNA.490-201ENST00000384413 102 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 Y_RNA.524-201ENST00000384564 100 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 RNU6-310P-201ENST00000384655 107 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 Y_RNA.561-201ENST00000384694 100 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 MT-TD-201ENST00000387419 68 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 RNU6-700P-201ENST00000391043 107 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 MTCYBP4-201ENST00000401524 249 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 MIR320B2-201ENST00000408479 138 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 Y_RNA.646-201ENST00000410980 101 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.67□□□□□ -2.14
TNFRSF4P43489 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
TNFRSF4P43489 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.67□□□□□ -2.14
TNFRSF4P43489 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.67□□□□□ -2.14
TNFRSF4P43489 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.67□□□□□ -2.14
TNFRSF4P43489 Y_RNA.632-201ENST00000459189 102 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 AC097473.1-201ENST00000508142 408 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 FGF7P4-201ENST00000509595 295 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 MTND3P22-201ENST00000510932 243 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 Y_RNA.706-201ENST00000516933 99 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 DNAJC19P9-201ENST00000555084 351 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 MIR5006-201ENST00000583027 110 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 MIR4753-201ENST00000585119 83 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 AC005014.2-201ENST00000607795 599 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 TCL6_2.1-201ENST00000615162 119 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 AC133104.2-201ENST00000615272 193 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 AC098657.3-201ENST00000620434 263 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 ZNF204P-201ENST00000416749 2397 ntBASIC1.67□□□□□ -2.14
TNFRSF4P43489 AL159152.1-201ENST00000635019 2587 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.66□□□□□ -2.14
TNFRSF4P43489 RNU6-545P-201ENST00000362681 104 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 Y_RNA.58-201ENST00000362807 102 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 RNU4-73P-201ENST00000363164 141 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 RNY1P10-201ENST00000363268 113 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 Y_RNA.154-201ENST00000363624 102 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 SNORD115-32-201ENST00000364079 82 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 RNY3P1-201ENST00000365085 102 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 RNY3-201ENST00000365484 102 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 RNY4P36-201ENST00000391116 96 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 RNA5SP100-201ENST00000410903 110 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 RNU6-321P-201ENST00000410912 106 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 RNA5SP59-201ENST00000410922 110 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.66□□□□□ -2.14
TNFRSF4P43489 AC092423.1-201ENST00000430165 186 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.66□□□□□ -2.14
TNFRSF4P43489 AC004386.2-201ENST00000441858 148 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 MTCO1P44-201ENST00000441935 243 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 RNU7-87P-201ENST00000459343 62 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 AC010531.2-201ENST00000465012 153 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.66□□□□□ -2.14
TNFRSF4P43489 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.66□□□□□ -2.14
TNFRSF4P43489 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.66□□□□□ -2.14
TNFRSF4P43489 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.66□□□□□ -2.14
TNFRSF4P43489 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.66□□□□□ -2.14
TNFRSF4P43489 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.66□□□□□ -2.14
TNFRSF4P43489 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.66□□□□□ -2.14
TNFRSF4P43489 SNRPGP20-201ENST00000604477 205 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.66□□□□□ -2.14
TNFRSF4P43489 AL355802.3-201ENST00000607571 545 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 AC100812.1-201ENST00000607622 580 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 AC083806.3-201ENST00000614016 455 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.66□□□□□ -2.14
TNFRSF4P43489 WWP1P1-201ENST00000466609 2769 ntBASIC1.65□□□□□ -2.14
TNFRSF4P43489 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.65□□□□□ -2.14
TNFRSF4P43489 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.65□□□□□ -2.14
TNFRSF4P43489 RNU6-890P-201ENST00000384121 107 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 SNORD116-29-201ENST00000384516 83 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 MIR1283-1-201ENST00000408494 87 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 Y_RNA.604-201ENST00000410574 102 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 MTCO2P27-201ENST00000420740 428 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 AC236972.2-201ENST00000434979 310 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 AL357134.1-201ENST00000445848 426 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 MTCO3P10-201ENST00000455912 772 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.65□□□□□ -2.15
TNFRSF4P43489 AC093303.1-201ENST00000514549 295 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 RNU6-1198P-201ENST00000516904 67 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 RNU6-264P-201ENST00000517134 104 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.65□□□□□ -2.15
TNFRSF4P43489 AC004584.2-201ENST00000570407 410 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 MIR5094-201ENST00000578766 85 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.65□□□□□ -2.15
TNFRSF4P43489 MIR4795-201ENST00000584182 89 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 AL359821.1-201ENST00000605519 182 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 AC084781.2-201ENST00000615568 161 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 AC022513.1-201ENST00000624512 117 ntBASIC1.65□□□□□ -2.15
TNFRSF4P43489 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 1135.5 ms