Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AL355073.2-201ENST00000612106 557 ntBASIC-0.65□□□□□ -2.51
HMGN4O00479 AC012409.4-201ENST00000612923 249 ntBASIC-0.65□□□□□ -2.51
HMGN4O00479 AC098679.4-201ENST00000624241 654 ntBASIC-0.65□□□□□ -2.51
HMGN4O00479 MTND4P4-201ENST00000439033 1366 ntBASIC-0.66□□□□□ -2.51
HMGN4O00479 RNU6-236P-201ENST00000363886 106 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 Y_RNA.412-201ENST00000384001 104 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 Y_RNA.504-201ENST00000384481 104 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 Z99497.1-201ENST00000421282 135 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 AC005042.3-201ENST00000453230 174 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC-0.66□□□□□ -2.52
HMGN4O00479 RNU6-221P-201ENST00000459541 99 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC-0.66□□□□□ -2.52
HMGN4O00479 RNU6-848P-201ENST00000515948 107 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 RNU7-129P-201ENST00000516128 62 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 RNU6-617P-201ENST00000516147 107 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 RNU6-473P-201ENST00000516164 107 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 RNU6-782P-201ENST00000516852 104 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 AC027288.2-201ENST00000553028 243 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 AC026470.2-201ENST00000561492 181 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 MIR4804-201ENST00000581683 73 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 MIR5006-201ENST00000583027 110 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 AL008636.1-201ENST00000625038 1018 ntBASIC-0.66□□□□□ -2.52
HMGN4O00479 RNU6-1305P-201ENST00000364353 104 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 Y_RNA.280-201ENST00000364765 112 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 RNU6-354P-201ENST00000383862 107 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 SNORA2A-201ENST00000383885 135 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 RNU6-610P-201ENST00000384264 107 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 RNU6-607P-201ENST00000411283 108 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 MTND4LP11-201ENST00000422184 280 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.67□□□□□ -2.52
HMGN4O00479 HMGN2P22-201ENST00000427588 175 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC-0.67□□□□□ -2.52
HMGN4O00479 RNU4-49P-201ENST00000516080 140 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 RNU6-123P-201ENST00000516163 102 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC-0.67□□□□□ -2.52
HMGN4O00479 TCL6_2.1-201ENST00000615162 119 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 uc_338.36-201ENST00000622331 158 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 AC005592.1-201ENST00000566527 1640 ntBASIC-0.67□□□□□ -2.52
HMGN4O00479 SNORA36.1-201ENST00000363424 132 ntBASIC-0.68□□□□□ -2.52
HMGN4O00479 MIR196A2-201ENST00000385189 110 ntBASIC-0.68□□□□□ -2.52
HMGN4O00479 RPS29P13-201ENST00000402041 169 ntBASIC-0.68□□□□□ -2.52
HMGN4O00479 AC009237.7-201ENST00000447357 229 ntBASIC-0.68□□□□□ -2.52
HMGN4O00479 RPL17P19-201ENST00000489069 552 ntBASIC-0.68□□□□□ -2.52
HMGN4O00479 MTND3P25-201ENST00000509243 135 ntBASIC-0.68□□□□□ -2.52
HMGN4O00479 MTCO3P27-201ENST00000514397 196 ntBASIC-0.68□□□□□ -2.52
HMGN4O00479 AC087894.1-201ENST00000538359 518 ntBASIC-0.68□□□□□ -2.52
HMGN4O00479 AC010999.1-201ENST00000611856 324 ntBASIC-0.68□□□□□ -2.52
HMGN4O00479 NEAT1_2.1-201ENST00000620525 105 ntBASIC-0.68□□□□□ -2.52
HMGN4O00479 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 RNA5SP300-201ENST00000391197 107 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 MIR891A-201ENST00000401237 79 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 ZNF885P-201ENST00000420174 1098 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 USP9YP11-201ENST00000427537 717 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-0.69□□□□□ -2.52
HMGN4O00479 AC069271.1-201ENST00000445577 156 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC-0.69□□□□□ -2.52
HMGN4O00479 SNORA74.3-201ENST00000517108 154 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 AL139286.2-201ENST00000606838 396 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 MIR3666-201ENST00000607845 111 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 FTX_2.1-201ENST00000618816 94 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 Six3os1_7.1-201ENST00000621512 201 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 SNORA43.4-201ENST00000629559 138 ntBASIC-0.69□□□□□ -2.52
HMGN4O00479 RNU6-428P-201ENST00000362942 107 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 RNU6-25P-201ENST00000383873 107 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 RNU6-48P-201ENST00000384161 107 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 RNU6-15P-201ENST00000384534 107 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 RNU6-29P-201ENST00000384637 107 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 MIR760-201ENST00000390220 80 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 RNA5SP482-201ENST00000391269 118 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 MTND3P20-201ENST00000407663 186 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 MIR1185-2-201ENST00000408687 86 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 MTND1P17-201ENST00000448961 204 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 AC117522.1-201ENST00000509821 380 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 RNA5SP216-201ENST00000516111 123 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 RNU2-56P-201ENST00000516826 190 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.7□□□□□ -2.52
HMGN4O00479 AC009712.1-201ENST00000564938 316 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 AC073539.2-201ENST00000597113 165 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 AC097460.3-201ENST00000623099 442 ntBASIC-0.7□□□□□ -2.52
HMGN4O00479 Y_RNA.192-201ENST00000363977 102 ntBASIC-0.71□□□□□ -2.52
HMGN4O00479 RNU6-934P-201ENST00000365154 107 ntBASIC-0.71□□□□□ -2.52
HMGN4O00479 Y_RNA.376-201ENST00000365638 108 ntBASIC-0.71□□□□□ -2.52
HMGN4O00479 RNU6-46P-201ENST00000383860 107 ntBASIC-0.71□□□□□ -2.52
HMGN4O00479 RNU6-468P-201ENST00000384003 109 ntBASIC-0.71□□□□□ -2.52
HMGN4O00479 TRIM60P10Y-201ENST00000425589 751 ntBASIC-0.71□□□□□ -2.52
HMGN4O00479 CALM2P2-201ENST00000428512 440 ntBASIC-0.71□□□□□ -2.52
HMGN4O00479 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC-0.71□□□□□ -2.52
HMGN4O00479 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC-0.71□□□□□ -2.52
HMGN4O00479 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC-0.71□□□□□ -2.52
HMGN4O00479 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC-0.71□□□□□ -2.52
HMGN4O00479 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC-0.71□□□□□ -2.52
HMGN4O00479 MIR2115-201ENST00000516657 100 ntBASIC-0.71□□□□□ -2.52
HMGN4O00479 MTATP6P2-201ENST00000603319 678 ntBASIC-0.71□□□□□ -2.52
HMGN4O00479 AL670379.3-201ENST00000605040 251 ntBASIC-0.71□□□□□ -2.52
HMGN4O00479 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC-0.71□□□□□ -2.52
HMGN4O00479 AC068792.1-201ENST00000621354 417 ntBASIC-0.71□□□□□ -2.52
HMGN4O00479 AL445523.1-201ENST00000451184 1362 ntBASIC-0.71□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms