Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 Y_RNA.458-201ENST00000384240 102 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 RNU6-611P-201ENST00000384276 104 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 MIR196B-201ENST00000384852 84 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 MIR215-201ENST00000384858 110 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 MT-TR-201ENST00000387439 65 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 RNA5SP184-201ENST00000411071 108 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.64□□□□□ -1.99
FOXN3O00409 AC093259.1-201ENST00000509755 300 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 RNU6-1143P-201ENST00000516125 104 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 RNU6-107P-201ENST00000516643 102 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.64□□□□□ -1.99
FOXN3O00409 AP003733.2-201ENST00000529409 171 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 CYCSP26-201ENST00000534107 320 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 AC023157.2-201ENST00000540596 141 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXN3O00409 AL442163.3-201ENST00000554110 156 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXN3O00409 AC078938.1-201ENST00000620993 318 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 MTND5P35-201ENST00000557537 1720 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
FOXN3O00409 AC007336.1-201ENST00000576365 3828 ntBASIC2.64□□□□□ -1.99
FOXN3O00409 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
FOXN3O00409 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
FOXN3O00409 MIR6073-201ENST00000352083 89 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 MIR21-201ENST00000362134 72 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 Y_RNA.143-201ENST00000363520 106 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 SNORA5B-201ENST00000363786 132 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 RNA5SP68-201ENST00000363885 119 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 Y_RNA.415-201ENST00000384012 112 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 Y_RNA.447-201ENST00000384184 113 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 RNU1-148P-201ENST00000384472 162 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 MIR518C-201ENST00000384822 101 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 FCF1P4-201ENST00000448326 183 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 AC107222.1-201ENST00000510899 637 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 AC067942.3-201ENST00000512025 362 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 Y_RNA.683-201ENST00000516508 93 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 AP002770.2-201ENST00000543613 532 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 MIR4753-201ENST00000585119 83 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 SNORD11B-201ENST00000607707 90 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXN3O00409 AC010615.1-201ENST00000594254 1764 ntBASIC2.63□□□□□ -1.99
FOXN3O00409 AP006437.1-201ENST00000641440 3685 ntBASIC2.62□□□□□ -1.99
FOXN3O00409 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
FOXN3O00409 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
FOXN3O00409 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
FOXN3O00409 RNU6-1301P-201ENST00000362724 104 ntBASIC2.62□□□□□ -1.99
FOXN3O00409 Y_RNA.60-201ENST00000362831 98 ntBASIC2.62□□□□□ -1.99
FOXN3O00409 RNY3P4-201ENST00000384428 101 ntBASIC2.62□□□□□ -1.99
FOXN3O00409 Y_RNA.556-201ENST00000384677 113 ntBASIC2.62□□□□□ -1.99
FOXN3O00409 RNA5SP181-201ENST00000410246 98 ntBASIC2.62□□□□□ -1.99
FOXN3O00409 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXN3O00409 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXN3O00409 RNU6-1132P-201ENST00000459214 107 ntBASIC2.62□□□□□ -1.99
FOXN3O00409 AC136932.1-201ENST00000574771 208 ntBASIC2.62□□□□□ -1.99
FOXN3O00409 AC005357.1-201ENST00000588399 301 ntBASIC2.62□□□□□ -1.99
FOXN3O00409 SNORD14A-201ENST00000606526 91 ntBASIC2.62□□□□□ -1.99
FOXN3O00409 U4.3-201ENST00000621047 82 ntBASIC2.62□□□□□ -1.99
FOXN3O00409 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
FOXN3O00409 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.61□□□□□ -1.99
FOXN3O00409 RNU1-62P-201ENST00000362599 164 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 Y_RNA.276-201ENST00000364732 109 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 RNU6-318P-201ENST00000384283 103 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 MIR144-201ENST00000384886 86 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 AL079342.1-201ENST00000401460 267 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 Y_RNA.595-201ENST00000410403 105 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 SNORD12B-201ENST00000410433 91 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 UQCRBP2-201ENST00000447827 297 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.61□□□□□ -1.99
FOXN3O00409 RNU6-408P-201ENST00000515910 100 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 RNA5SP148-201ENST00000516527 94 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.61□□□□□ -1.99
FOXN3O00409 MIR3128-201ENST00000581957 66 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 AL031274.2-201ENST00000599419 203 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 MIR6817-201ENST00000615588 66 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 MIR376A1-201ENST00000616574 68 ntBASIC2.61□□□□□ -1.99
FOXN3O00409 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
FOXN3O00409 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
FOXN3O00409 SNORD31B-201ENST00000364977 69 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 SNORA6-201ENST00000384033 151 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 Y_RNA.439-201ENST00000384119 94 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 RNU6-937P-201ENST00000384325 106 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 MIR329-1-201ENST00000385028 80 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 MT-TG-201ENST00000387429 68 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 AL359511.1-201ENST00000402970 211 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 MIR1283-1-201ENST00000408494 87 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 Y_RNA.602-201ENST00000410535 92 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 SDAD1P3-201ENST00000427380 333 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.6□□□□□ -1.99
FOXN3O00409 AL137159.1-201ENST00000452808 512 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.6□□□□□ -1.99
FOXN3O00409 SNORD127-201ENST00000458892 86 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 TRBVB-201ENST00000477100 408 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 MTND1P19-201ENST00000511780 315 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 AC026271.5-201ENST00000577873 130 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 MIR4659A-201ENST00000580269 81 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 AC006023.1-201ENST00000603944 259 ntBASIC2.6□□□□□ -1.99
FOXN3O00409 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms