Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Gm17808-201ENSMUST00000200859 894 ntBASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Gm45328-201ENSMUST00000210942 917 ntBASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Prpf40aQ9R1C7 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Prpf40aQ9R1C7 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Prpf40aQ9R1C7 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
Prpf40aQ9R1C7 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Prpf40aQ9R1C7 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 AC159205.3-201ENSMUST00000224614 874 ntBASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Prpf40aQ9R1C7 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Prpf40aQ9R1C7 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms