Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC18.02■□□□□ 0.48
Ushbp1Q8R370 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Ushbp1Q8R370 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Ushbp1Q8R370 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ushbp1Q8R370 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
Ushbp1Q8R370 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC18.02■□□□□ 0.48
Ushbp1Q8R370 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Ushbp1Q8R370 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ushbp1Q8R370 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ushbp1Q8R370 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ushbp1Q8R370 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Ushbp1Q8R370 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Ushbp1Q8R370 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Ushbp1Q8R370 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Ushbp1Q8R370 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Ushbp1Q8R370 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC18.02■□□□□ 0.47
Ushbp1Q8R370 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Gm25925-201ENSMUST00000158314 306 ntBASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 AC124569.2-201ENSMUST00000225998 818 ntBASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ushbp1Q8R370 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC18■□□□□ 0.47
Ushbp1Q8R370 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC18■□□□□ 0.47
Ushbp1Q8R370 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC18■□□□□ 0.47
Ushbp1Q8R370 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Ushbp1Q8R370 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC18■□□□□ 0.47
Ushbp1Q8R370 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC18■□□□□ 0.47
Ushbp1Q8R370 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC18■□□□□ 0.47
Ushbp1Q8R370 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Ushbp1Q8R370 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Ushbp1Q8R370 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ushbp1Q8R370 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Gm12895-201ENSMUST00000122214 226 ntBASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Gm11452-201ENSMUST00000122376 690 ntBASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms