Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clrn1Q8K445 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Clrn1Q8K445 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clrn1Q8K445 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clrn1Q8K445 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Clrn1Q8K445 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Clrn1Q8K445 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Clrn1Q8K445 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.02
Clrn1Q8K445 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Clrn1Q8K445 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.02
Clrn1Q8K445 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Clrn1Q8K445 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Clrn1Q8K445 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Clrn1Q8K445 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Clrn1Q8K445 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Gm7977-201ENSMUST00000193787 748 ntBASIC15.2■□□□□ 0.02
Clrn1Q8K445 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 AC125350.1-201ENSMUST00000225115 903 ntBASIC15.2■□□□□ 0.02
Clrn1Q8K445 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Clrn1Q8K445 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC15.19■□□□□ 0.02
Clrn1Q8K445 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Clrn1Q8K445 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Gm32996-201ENSMUST00000199828 1447 ntBASIC15.18■□□□□ 0.02
Clrn1Q8K445 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.18■□□□□ 0.02
Clrn1Q8K445 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Clrn1Q8K445 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Clrn1Q8K445 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Clrn1Q8K445 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Clrn1Q8K445 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Clrn1Q8K445 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC15.17■□□□□ 0.02
Clrn1Q8K445 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Clrn1Q8K445 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Clrn1Q8K445 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 102.8 ms