Protein–RNA interactions for Protein: Q8CDG3

Vcpip1, Deubiquitinating protein VCIP135, mousemouse

Predictions only

Length 1,220 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vcpip1Q8CDG3 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vcpip1Q8CDG3 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vcpip1Q8CDG3 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vcpip1Q8CDG3 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Vcpip1Q8CDG3 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Vcpip1Q8CDG3 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Gm23634-201ENSMUST00000175071 91 ntBASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Vcpip1Q8CDG3 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Vcpip1Q8CDG3 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Gm36967-201ENSMUST00000193814 266 ntBASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 AC134329.2-201ENSMUST00000217897 428 ntBASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 AC122351.1-201ENSMUST00000220467 126 ntBASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Vcpip1Q8CDG3 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Vcpip1Q8CDG3 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Vcpip1Q8CDG3 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vcpip1Q8CDG3 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vcpip1Q8CDG3 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.27■□□□□ 0.36
Vcpip1Q8CDG3 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Vcpip1Q8CDG3 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms