Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Gm28659-201ENSMUST00000188013 759 ntBASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Gm13884-201ENSMUST00000118103 829 ntBASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Mir8098-201ENSMUST00000184011 137 ntBASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.78■□□□□ 0.44
Trim47Q8C0E3 AC164629.2-201ENSMUST00000217916 270 ntBASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim47Q8C0E3 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC17.77■□□□□ 0.44
Trim47Q8C0E3 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim47Q8C0E3 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC17.77■□□□□ 0.43
Trim47Q8C0E3 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim47Q8C0E3 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim47Q8C0E3 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.43
Trim47Q8C0E3 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Trim47Q8C0E3 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim47Q8C0E3 Wnt10b-206ENSMUST00000228546 2709 ntBASIC17.77■□□□□ 0.43
Trim47Q8C0E3 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
Trim47Q8C0E3 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Trim47Q8C0E3 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim47Q8C0E3 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim47Q8C0E3 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 64.9 ms