Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sh3rf1Q69ZI1 Ccdc166-201ENSMUST00000182172 2584 ntBASIC16.33■□□□□ 0.21
Sh3rf1Q69ZI1 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Sh3rf1Q69ZI1 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Sh3rf1Q69ZI1 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Sh3rf1Q69ZI1 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Sh3rf1Q69ZI1 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Sh3rf1Q69ZI1 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Sh3rf1Q69ZI1 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Sh3rf1Q69ZI1 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 AC120002.2-201ENSMUST00000220205 773 ntBASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Sh3rf1Q69ZI1 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 AC154412.1-201ENSMUST00000226540 2786 ntBASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Sh3rf1Q69ZI1 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Gm9013-201ENSMUST00000132939 882 ntBASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Gm27704-201ENSMUST00000185094 107 ntBASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.31■□□□□ 0.2
Sh3rf1Q69ZI1 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Gm29518-201ENSMUST00000190858 372 ntBASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Gm44616-201ENSMUST00000206417 1732 ntBASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms