Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Six4Q61321 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Six4Q61321 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Six4Q61321 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.24■□□□□ 0.19
Six4Q61321 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Six4Q61321 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
Six4Q61321 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Six4Q61321 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Six4Q61321 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC16.23■□□□□ 0.19
Six4Q61321 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC16.23■□□□□ 0.19
Six4Q61321 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Six4Q61321 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC16.23■□□□□ 0.19
Six4Q61321 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
Six4Q61321 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC16.23■□□□□ 0.19
Six4Q61321 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Six4Q61321 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC16.22■□□□□ 0.19
Six4Q61321 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.22■□□□□ 0.19
Six4Q61321 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Six4Q61321 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC16.22■□□□□ 0.19
Six4Q61321 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Six4Q61321 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Six4Q61321 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.21■□□□□ 0.19
Six4Q61321 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
Six4Q61321 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
Six4Q61321 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC16.21■□□□□ 0.19
Six4Q61321 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Six4Q61321 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC16.21■□□□□ 0.19
Six4Q61321 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC16.21■□□□□ 0.19
Six4Q61321 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Six4Q61321 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Six4Q61321 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Six4Q61321 Gm19430-201ENSMUST00000193847 2137 ntBASIC16.21■□□□□ 0.18
Six4Q61321 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Six4Q61321 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.2■□□□□ 0.18
Six4Q61321 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Six4Q61321 Ntrk2-205ENSMUST00000224402 2284 ntBASIC16.2■□□□□ 0.18
Six4Q61321 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 Gm15165-201ENSMUST00000118140 502 ntBASIC16.2■□□□□ 0.18
Six4Q61321 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC16.2■□□□□ 0.18
Six4Q61321 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Six4Q61321 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
Six4Q61321 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Six4Q61321 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC16.2■□□□□ 0.18
Six4Q61321 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC16.2■□□□□ 0.18
Six4Q61321 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
Six4Q61321 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Six4Q61321 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Six4Q61321 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC16.19■□□□□ 0.18
Six4Q61321 Gm44729-201ENSMUST00000206759 2052 ntBASIC16.19■□□□□ 0.18
Six4Q61321 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Six4Q61321 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Six4Q61321 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC16.19■□□□□ 0.18
Six4Q61321 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Six4Q61321 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Six4Q61321 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms