Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.73■□□□□ 0.43
CtcfQ61164 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC17.73■□□□□ 0.43
CtcfQ61164 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC17.73■□□□□ 0.43
CtcfQ61164 Gm44450-201ENSMUST00000199528 114 ntBASIC17.73■□□□□ 0.43
CtcfQ61164 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CtcfQ61164 Spsb2-203ENSMUST00000112473 1322 ntBASIC17.72■□□□□ 0.43
CtcfQ61164 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
CtcfQ61164 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CtcfQ61164 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC17.72■□□□□ 0.43
CtcfQ61164 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.72■□□□□ 0.43
CtcfQ61164 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.72■□□□□ 0.43
CtcfQ61164 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Gm7213-201ENSMUST00000215977 950 ntBASIC17.72■□□□□ 0.43
CtcfQ61164 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CtcfQ61164 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CtcfQ61164 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CtcfQ61164 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.71■□□□□ 0.43
CtcfQ61164 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.71■□□□□ 0.43
CtcfQ61164 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.71■□□□□ 0.43
CtcfQ61164 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CtcfQ61164 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CtcfQ61164 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CtcfQ61164 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.71■□□□□ 0.43
CtcfQ61164 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC17.71■□□□□ 0.43
CtcfQ61164 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CtcfQ61164 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CtcfQ61164 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
CtcfQ61164 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.7■□□□□ 0.42
CtcfQ61164 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC17.7■□□□□ 0.42
CtcfQ61164 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Gm18421-201ENSMUST00000204122 625 ntBASIC17.7■□□□□ 0.42
CtcfQ61164 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC17.7■□□□□ 0.42
CtcfQ61164 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.7■□□□□ 0.42
CtcfQ61164 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms