Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc88aQ5SNZ0 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc88aQ5SNZ0 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
Ccdc88aQ5SNZ0 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Ccdc88aQ5SNZ0 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Ccdc88aQ5SNZ0 Gm14057-201ENSMUST00000120631 482 ntBASIC18.39■□□□□ 0.54
Ccdc88aQ5SNZ0 Mir8117-201ENSMUST00000184773 107 ntBASIC18.39■□□□□ 0.54
Ccdc88aQ5SNZ0 AC124549.3-201ENSMUST00000225541 367 ntBASIC18.39■□□□□ 0.54
Ccdc88aQ5SNZ0 AC117588.1-201ENSMUST00000228510 999 ntBASIC18.39■□□□□ 0.54
Ccdc88aQ5SNZ0 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
Ccdc88aQ5SNZ0 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Ccdc88aQ5SNZ0 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Ccdc88aQ5SNZ0 Gm5837-201ENSMUST00000191844 1369 ntBASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ccdc88aQ5SNZ0 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Gm4913-201ENSMUST00000117075 1290 ntBASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Gm43438-201ENSMUST00000198133 379 ntBASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc88aQ5SNZ0 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Gm11780-201ENSMUST00000136880 516 ntBASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Gm44872-201ENSMUST00000207864 420 ntBASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc88aQ5SNZ0 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc88aQ5SNZ0 Wnt10b-206ENSMUST00000228546 2709 ntBASIC18.36■□□□□ 0.53
Ccdc88aQ5SNZ0 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc88aQ5SNZ0 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC18.36■□□□□ 0.53
Ccdc88aQ5SNZ0 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC18.36■□□□□ 0.53
Ccdc88aQ5SNZ0 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC18.36■□□□□ 0.53
Ccdc88aQ5SNZ0 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc88aQ5SNZ0 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc88aQ5SNZ0 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC18.36■□□□□ 0.53
Ccdc88aQ5SNZ0 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc88aQ5SNZ0 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc88aQ5SNZ0 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc88aQ5SNZ0 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms