Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp28Q5I043 Gm45212-201ENSMUST00000205831 3403 ntBASIC18.29■□□□□ 0.52
Usp28Q5I043 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Usp28Q5I043 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Usp28Q5I043 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Usp28Q5I043 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC18.28■□□□□ 0.52
Usp28Q5I043 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC18.28■□□□□ 0.52
Usp28Q5I043 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC18.28■□□□□ 0.52
Usp28Q5I043 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.28■□□□□ 0.52
Usp28Q5I043 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Usp28Q5I043 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp28Q5I043 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp28Q5I043 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp28Q5I043 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Usp28Q5I043 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Usp28Q5I043 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Usp28Q5I043 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp28Q5I043 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp28Q5I043 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.27■□□□□ 0.52
Usp28Q5I043 Gm11860-201ENSMUST00000122346 1010 ntBASIC18.27■□□□□ 0.52
Usp28Q5I043 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC18.27■□□□□ 0.52
Usp28Q5I043 Gm27389-201ENSMUST00000183622 195 ntBASIC18.27■□□□□ 0.52
Usp28Q5I043 Gm10252-201ENSMUST00000209541 832 ntBASIC18.27■□□□□ 0.52
Usp28Q5I043 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC18.27■□□□□ 0.52
Usp28Q5I043 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp28Q5I043 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Usp28Q5I043 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Usp28Q5I043 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Usp28Q5I043 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC18.27■□□□□ 0.52
Usp28Q5I043 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp28Q5I043 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp28Q5I043 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp28Q5I043 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp28Q5I043 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.27■□□□□ 0.51
Usp28Q5I043 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp28Q5I043 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Usp28Q5I043 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Usp28Q5I043 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Usp28Q5I043 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Usp28Q5I043 Gm22697-201ENSMUST00000175194 63 ntBASIC18.26■□□□□ 0.51
Usp28Q5I043 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.26■□□□□ 0.51
Usp28Q5I043 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Usp28Q5I043 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 AC163637.1-201ENSMUST00000215491 1894 ntBASIC18.26■□□□□ 0.51
Usp28Q5I043 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Usp28Q5I043 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp28Q5I043 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Usp28Q5I043 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Usp28Q5I043 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Usp28Q5I043 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Usp28Q5I043 Gm18032-201ENSMUST00000222541 538 ntBASIC18.25■□□□□ 0.51
Usp28Q5I043 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usp28Q5I043 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 72.6 ms