Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
Col8a1Q00780 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Zcchc6-207ENSMUST00000225576 2499 ntBASIC13.7□□□□□ -0.22
Col8a1Q00780 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col8a1Q00780 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Col8a1Q00780 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 AC157650.3-201ENSMUST00000225058 1476 ntBASIC13.69□□□□□ -0.22
Col8a1Q00780 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Gm7222-201ENSMUST00000117512 906 ntBASIC13.69□□□□□ -0.22
Col8a1Q00780 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC13.69□□□□□ -0.22
Col8a1Q00780 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC13.69□□□□□ -0.22
Col8a1Q00780 Mir8117-201ENSMUST00000184773 107 ntBASIC13.69□□□□□ -0.22
Col8a1Q00780 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Col8a1Q00780 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Col8a1Q00780 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC13.69□□□□□ -0.22
Col8a1Q00780 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col8a1Q00780 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Gm43548-201ENSMUST00000197139 2353 ntBASIC13.68□□□□□ -0.22
Col8a1Q00780 Gm3928-201ENSMUST00000121141 1307 ntBASIC13.68□□□□□ -0.22
Col8a1Q00780 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Col8a1Q00780 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Col8a1Q00780 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Col8a1Q00780 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC13.68□□□□□ -0.22
Col8a1Q00780 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC13.68□□□□□ -0.22
Col8a1Q00780 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC13.68□□□□□ -0.22
Col8a1Q00780 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Col8a1Q00780 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Col8a1Q00780 Gm6598-201ENSMUST00000202719 2615 ntBASIC13.68□□□□□ -0.22
Col8a1Q00780 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC13.68□□□□□ -0.22
Col8a1Q00780 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col8a1Q00780 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Col8a1Q00780 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Col8a1Q00780 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col8a1Q00780 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col8a1Q00780 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col8a1Q00780 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col8a1Q00780 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC13.67□□□□□ -0.22
Col8a1Q00780 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col8a1Q00780 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC13.67□□□□□ -0.22
Col8a1Q00780 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC13.67□□□□□ -0.22
Col8a1Q00780 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col8a1Q00780 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col8a1Q00780 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC13.67□□□□□ -0.22
Col8a1Q00780 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC13.67□□□□□ -0.22
Col8a1Q00780 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC13.67□□□□□ -0.22
Col8a1Q00780 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col8a1Q00780 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col8a1Q00780 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col8a1Q00780 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col8a1Q00780 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Gm15635-204ENSMUST00000208024 2539 ntBASIC13.66□□□□□ -0.22
Col8a1Q00780 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Col8a1Q00780 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Col8a1Q00780 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Col8a1Q00780 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Col8a1Q00780 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col8a1Q00780 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms