Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Nkx3-1P97436 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Gm11780-201ENSMUST00000136880 516 ntBASIC13.88□□□□□ -0.19
Nkx3-1P97436 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC13.88□□□□□ -0.19
Nkx3-1P97436 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Gm8349-201ENSMUST00000182720 1003 ntBASIC13.88□□□□□ -0.19
Nkx3-1P97436 Gm5264-201ENSMUST00000190584 848 ntBASIC13.88□□□□□ -0.19
Nkx3-1P97436 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Gm9172-201ENSMUST00000212092 954 ntBASIC13.88□□□□□ -0.19
Nkx3-1P97436 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Nkx3-1P97436 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Gm6550-201ENSMUST00000187574 993 ntBASIC13.87□□□□□ -0.19
Nkx3-1P97436 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 AV026068-213ENSMUST00000223675 1171 ntBASIC13.87□□□□□ -0.19
Nkx3-1P97436 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Nkx3-1P97436 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Haglr-201ENSMUST00000100000 2085 ntBASIC13.86□□□□□ -0.19
Nkx3-1P97436 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Gm15467-201ENSMUST00000120582 445 ntBASIC13.86□□□□□ -0.19
Nkx3-1P97436 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Gm37500-201ENSMUST00000192059 1443 ntBASIC13.86□□□□□ -0.19
Nkx3-1P97436 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Nkx3-1P97436 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC13.85□□□□□ -0.19
Nkx3-1P97436 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Nkx3-1P97436 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Nkx3-1P97436 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC13.85□□□□□ -0.19
Nkx3-1P97436 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms