Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Gm27867-201ENSMUST00000184778 125 ntBASIC19.07■□□□□ 0.64
Ercc3P49135 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Ercc3P49135 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ercc3P49135 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ercc3P49135 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Ercc3P49135 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ercc3P49135 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ercc3P49135 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Ercc3P49135 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ercc3P49135 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Ercc3P49135 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ercc3P49135 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Ercc3P49135 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ercc3P49135 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ercc3P49135 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ercc3P49135 Gm28265-201ENSMUST00000188201 2319 ntBASIC19.06■□□□□ 0.64
Ercc3P49135 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ercc3P49135 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ercc3P49135 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC19.06■□□□□ 0.64
Ercc3P49135 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ercc3P49135 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ercc3P49135 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ercc3P49135 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ercc3P49135 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Ercc3P49135 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ercc3P49135 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ercc3P49135 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ercc3P49135 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ercc3P49135 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ercc3P49135 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Ercc3P49135 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ercc3P49135 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ercc3P49135 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ercc3P49135 Gm12895-201ENSMUST00000122214 226 ntBASIC19.05■□□□□ 0.64
Ercc3P49135 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC19.05■□□□□ 0.64
Ercc3P49135 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC19.05■□□□□ 0.64
Ercc3P49135 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ercc3P49135 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC19.05■□□□□ 0.64
Ercc3P49135 Gm17971-201ENSMUST00000190239 806 ntBASIC19.05■□□□□ 0.64
Ercc3P49135 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ercc3P49135 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ercc3P49135 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Ercc3P49135 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ercc3P49135 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC19.05■□□□□ 0.64
Ercc3P49135 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ercc3P49135 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Ercc3P49135 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.04■□□□□ 0.64
Ercc3P49135 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Ercc3P49135 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC19.04■□□□□ 0.64
Ercc3P49135 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
Ercc3P49135 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Ercc3P49135 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Ercc3P49135 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Ercc3P49135 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC19.04■□□□□ 0.64
Ercc3P49135 Gm37812-201ENSMUST00000195216 2475 ntBASIC19.03■□□□□ 0.64
Ercc3P49135 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Wnt10b-206ENSMUST00000228546 2709 ntBASIC19.03■□□□□ 0.64
Ercc3P49135 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC19.03■□□□□ 0.64
Ercc3P49135 Gm13312-201ENSMUST00000119631 718 ntBASIC19.03■□□□□ 0.64
Ercc3P49135 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC19.03■□□□□ 0.64
Ercc3P49135 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Ercc3P49135 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Ercc3P49135 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC19.03■□□□□ 0.64
Ercc3P49135 Gm6858-201ENSMUST00000208582 1468 ntBASIC19.03■□□□□ 0.64
Ercc3P49135 Gm42918-201ENSMUST00000199249 1580 ntBASIC19.02■□□□□ 0.64
Ercc3P49135 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Ercc3P49135 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Ercc3P49135 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ercc3P49135 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ercc3P49135 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ercc3P49135 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms