Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC18.73■□□□□ 0.59
Col1a1P11087 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
Col1a1P11087 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col1a1P11087 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Col1a1P11087 AC119177.1-201ENSMUST00000227647 1332 ntBASIC18.72■□□□□ 0.59
Col1a1P11087 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Gm6257-201ENSMUST00000163864 910 ntBASIC18.72■□□□□ 0.59
Col1a1P11087 Mir7023-201ENSMUST00000185093 64 ntBASIC18.72■□□□□ 0.59
Col1a1P11087 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC18.72■□□□□ 0.59
Col1a1P11087 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC18.72■□□□□ 0.59
Col1a1P11087 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Col1a1P11087 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col1a1P11087 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC18.71■□□□□ 0.59
Col1a1P11087 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC18.71■□□□□ 0.59
Col1a1P11087 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Col1a1P11087 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Col1a1P11087 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Col1a1P11087 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Col1a1P11087 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Col1a1P11087 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Col1a1P11087 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Gm13365-201ENSMUST00000121188 973 ntBASIC18.71■□□□□ 0.59
Col1a1P11087 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col1a1P11087 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Col1a1P11087 Wdyhv1-206ENSMUST00000227142 786 ntBASIC18.71■□□□□ 0.59
Col1a1P11087 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC18.71■□□□□ 0.59
Col1a1P11087 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Col1a1P11087 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
Col1a1P11087 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col1a1P11087 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Col1a1P11087 Gm16401-202ENSMUST00000197463 2074 ntBASIC18.7■□□□□ 0.58
Col1a1P11087 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col1a1P11087 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Col1a1P11087 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.7■□□□□ 0.58
Col1a1P11087 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col1a1P11087 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col1a1P11087 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col1a1P11087 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col1a1P11087 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col1a1P11087 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col1a1P11087 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col1a1P11087 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC18.7■□□□□ 0.58
Col1a1P11087 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col1a1P11087 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC18.7■□□□□ 0.58
Col1a1P11087 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Col1a1P11087 Mir6990-201ENSMUST00000183724 91 ntBASIC18.7■□□□□ 0.58
Col1a1P11087 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC18.7■□□□□ 0.58
Col1a1P11087 Thap2-203ENSMUST00000218989 527 ntBASIC18.7■□□□□ 0.58
Col1a1P11087 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Col1a1P11087 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col1a1P11087 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col1a1P11087 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.69■□□□□ 0.58
Col1a1P11087 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Col1a1P11087 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col1a1P11087 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col1a1P11087 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col1a1P11087 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC18.69■□□□□ 0.58
Col1a1P11087 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col1a1P11087 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Col1a1P11087 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col1a1P11087 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC18.69■□□□□ 0.58
Col1a1P11087 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Col1a1P11087 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col1a1P11087 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC18.69■□□□□ 0.58
Col1a1P11087 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col1a1P11087 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col1a1P11087 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col1a1P11087 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.69■□□□□ 0.58
Col1a1P11087 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col1a1P11087 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col1a1P11087 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col1a1P11087 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col1a1P11087 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms