Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Chmp6P0C0A3 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Gm9867-201ENSMUST00000192212 2647 ntBASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chmp6P0C0A3 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Chmp6P0C0A3 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Chmp6P0C0A3 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Chmp6P0C0A3 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Chmp6P0C0A3 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Chmp6P0C0A3 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Chmp6P0C0A3 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chmp6P0C0A3 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chmp6P0C0A3 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms