Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC12.5□□□□□ -0.41
Hoxd3P09027 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC12.5□□□□□ -0.41
Hoxd3P09027 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Mir8098-201ENSMUST00000184011 137 ntBASIC12.5□□□□□ -0.41
Hoxd3P09027 Gm27867-201ENSMUST00000184778 125 ntBASIC12.5□□□□□ -0.41
Hoxd3P09027 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
Hoxd3P09027 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Gm45774-201ENSMUST00000211992 2665 ntBASIC12.5□□□□□ -0.41
Hoxd3P09027 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hoxd3P09027 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Hoxd3P09027 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Hoxd3P09027 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Hoxd3P09027 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC12.49□□□□□ -0.41
Hoxd3P09027 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC12.49□□□□□ -0.41
Hoxd3P09027 Gm8369-204ENSMUST00000188633 1227 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Hoxd3P09027 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC12.49□□□□□ -0.41
Hoxd3P09027 AC159301.1-201ENSMUST00000225130 1182 ntBASIC12.49□□□□□ -0.41
Hoxd3P09027 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Hoxd3P09027 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Hoxd3P09027 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
Hoxd3P09027 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Hoxd3P09027 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
Hoxd3P09027 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
Hoxd3P09027 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC12.48□□□□□ -0.41
Hoxd3P09027 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC12.48□□□□□ -0.41
Hoxd3P09027 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC12.48□□□□□ -0.41
Hoxd3P09027 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Hoxd3P09027 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Hoxd3P09027 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Hoxd3P09027 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Gm5864-201ENSMUST00000202263 970 ntBASIC12.47□□□□□ -0.41
Hoxd3P09027 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
Hoxd3P09027 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Hoxd3P09027 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 66.2 ms